Literature DB >> 26085848

Semiparametric Bayes local additive models for longitudinal data.

Zhaowei Hua1, Hongtu Zhu1, David B Dunson2.   

Abstract

In longitudinal data analysis, there is great interest in assessing the impact of predictors on the time-varying trajectory in a response variable. In such settings, an important issue is to account for heterogeneity in the shape of the trajectory among subjects, while allowing the impact of the predictors to vary across subjects. We propose a flexible semiparametric Bayes approach for addressing this issue relying on a local partition process prior, which allows flexible local borrowing of information across subjects. Local hypothesis testing and credible bands are developed for the identification of time windows across which a predictor has a significant impact, while adjusting for multiple comparisons. Posterior computation proceeds via an efficient MCMC algorithm using the exact block Gibbs sampler. The methods are assessed using simulation studies and applied to a yeast cell-cycle gene expression data set.

Entities:  

Keywords:  Confidence band; Functional data; Gaussian process; Local partition process; Random effects; Time-varying coefficients

Year:  2015        PMID: 26085848      PMCID: PMC4465815          DOI: 10.1007/s12561-013-9104-y

Source DB:  PubMed          Journal:  Stat Biosci        ISSN: 1867-1764


  18 in total

1.  Serial regulation of transcriptional regulators in the yeast cell cycle.

Authors:  I Simon; J Barnett; N Hannett; C T Harbison; N J Rinaldi; T L Volkert; J J Wyrick; J Zeitlinger; D K Gifford; T S Jaakkola; R A Young
Journal:  Cell       Date:  2001-09-21       Impact factor: 41.582

2.  A Bayesian model for sparse functional data.

Authors:  Wesley K Thompson; Ori Rosen
Journal:  Biometrics       Date:  2007-06-15       Impact factor: 2.571

3.  Time-varying coefficient models for the analysis of air pollution and health outcome data.

Authors:  Duncan Lee; Gavin Shaddick
Journal:  Biometrics       Date:  2007-04-09       Impact factor: 2.571

4.  Group SCAD regression analysis for microarray time course gene expression data.

Authors:  Lifeng Wang; Guang Chen; Hongzhe Li
Journal:  Bioinformatics       Date:  2007-04-26       Impact factor: 6.937

5.  A semiparametric Bayesian approach to the random effects model.

Authors:  K P Kleinman; J G Ibrahim
Journal:  Biometrics       Date:  1998-09       Impact factor: 2.571

6.  At least 1400 base pairs of 5'-flanking DNA is required for the correct expression of the HO gene in yeast.

Authors:  K Nasmyth
Journal:  Cell       Date:  1985-08       Impact factor: 41.582

7.  A Flexible Approach to Bayesian Multiple Curve Fitting.

Authors:  Carsten H Botts; Michael J Daniels
Journal:  Comput Stat Data Anal       Date:  2008-08-15       Impact factor: 1.681

8.  Nonparametric Bayes local partition models for random effects.

Authors:  David B Dunson
Journal:  Biometrika       Date:  2009       Impact factor: 2.445

9.  Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

Authors:  P T Spellman; G Sherlock; M Q Zhang; V R Iyer; K Anders; M B Eisen; P O Brown; D Botstein; B Futcher
Journal:  Mol Biol Cell       Date:  1998-12       Impact factor: 4.138

10.  Clustering of genes into regulons using integrated modeling-COGRIM.

Authors:  Guang Chen; Shane T Jensen; Christian J Stoeckert
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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