Literature DB >> 2608479

Conformational characteristics of 4-acetylcytidine found in tRNA.

G Kawai1, T Hashizume, T Miyazawa, J A McCloskey, S Yokoyama.   

Abstract

The conformational characteristics of a modified nucleoside 4-acetylcytidine (ac4C) was analyzed by proton nuclear magnetic resonance spectroscopy. This nucleoside was found to take the C3'-endo form predominantly. The enthalpy difference between the C2'-endo form and the C3'-endo form of the ribose moiety of ac4C was determined and 4-acetylation was found to stabilize the C3'-endo form further by 0.83 kcal.mol-1. This conformational characteristics of ac4C is probably important for the correct codon recognition and the stability of the tertiary structure of tRNA molecule.

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Year:  1989        PMID: 2608479

Source DB:  PubMed          Journal:  Nucleic Acids Symp Ser        ISSN: 0261-3166


  12 in total

1.  The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA.

Authors:  Joseph M Whipple; Elizabeth A Lane; Irina Chernyakov; Sonia D'Silva; Eric M Phizicky
Journal:  Genes Dev       Date:  2011-06-01       Impact factor: 11.361

2.  RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon.

Authors:  Sarin Chimnaronk; Tateki Suzuki; Tetsuhiro Manita; Yoshiho Ikeuchi; Min Yao; Tsutomu Suzuki; Isao Tanaka
Journal:  EMBO J       Date:  2009-03-26       Impact factor: 11.598

3.  CNNLSTMac4CPred: A Hybrid Model for N4-Acetylcytidine Prediction.

Authors:  Guiyang Zhang; Wei Luo; Jianyi Lyu; Zu-Guo Yu; Guohua Huang
Journal:  Interdiscip Sci       Date:  2022-02-01       Impact factor: 2.233

Review 4.  tRNA Modifications: Impact on Structure and Thermal Adaptation.

Authors:  Christian Lorenz; Christina E Lünse; Mario Mörl
Journal:  Biomolecules       Date:  2017-04-04

5.  The Thermus thermophilus DEAD-box protein Hera is a general RNA binding protein and plays a key role in tRNA metabolism.

Authors:  Pascal Donsbach; Brian A Yee; Dione Sanchez-Hevia; José Berenguer; Stefan Aigner; Gene W Yeo; Dagmar Klostermeier
Journal:  RNA       Date:  2020-07-15       Impact factor: 4.942

6.  Prognostic and Immunological Role of mRNA ac4C Regulator NAT10 in Pan-Cancer: New Territory for Cancer Research?

Authors:  Chuanxi Yang; Tingting Wu; Jing Zhang; Jinhui Liu; Kun Zhao; Wei Sun; Xin Zhou; Xiangqing Kong; Jing Shi
Journal:  Front Oncol       Date:  2021-05-19       Impact factor: 6.244

7.  The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon.

Authors:  Yoshiho Ikeuchi; Kei Kitahara; Tsutomu Suzuki
Journal:  EMBO J       Date:  2008-07-31       Impact factor: 11.598

8.  RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes.

Authors:  Henri Grosjean; Christine Gaspin; Christian Marck; Wayne A Decatur; Valérie de Crécy-Lagard
Journal:  BMC Genomics       Date:  2008-10-09       Impact factor: 3.969

9.  A Salmonella Toxin Promotes Persister Formation through Acetylation of tRNA.

Authors:  Angela M Cheverton; Bridget Gollan; Michal Przydacz; Chi T Wong; Anastasia Mylona; Stephen A Hare; Sophie Helaine
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

Review 10.  The Processing, Gene Regulation, Biological Functions, and Clinical Relevance of N4-Acetylcytidine on RNA: A Systematic Review.

Authors:  Gehui Jin; Mingqing Xu; Mengsha Zou; Shiwei Duan
Journal:  Mol Ther Nucleic Acids       Date:  2020-02-08       Impact factor: 8.886

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