| Literature DB >> 26083740 |
Panga Jaipal Reddy, Sneha Sinha, Sandipan Ray, Gajanan J Sathe, Aditi Chatterjee, T S Keshava Prasad, Snigdha Dhali, Rapole Srikanth, Dulal Panda, Sanjeeva Srivastava.
Abstract
[This corrects the article DOI: 10.1371/journal.pone.0120620.].Entities:
Year: 2015 PMID: 26083740 PMCID: PMC4471116 DOI: 10.1371/journal.pone.0130782
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Partial list of differentially expressed proteins in B. subtilis due to curcumin treatment obtained from iTRAQ analysis*
| UniProt ID | Name of the protein | Gene name | Coverage | Uni. peptides(Orbitrap) | Fold change (Orbitrap) | Uni. peptides(Q-TOF) | Fold change (QTOF) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 20 min | 60 min | 120 min | 20 min | 60 min | 120 min | ||||||
|
| |||||||||||
| P70965 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 | MurAA | 35.32 | 13 | 0.89 | 0.64 | 0.41 | 13 | 0.886 | 0.609 | 0.303 |
| Q03522 | UDP-N-acetylmuramoylalanine—D-glutamate ligase | MurD | 31.04 | 13 | 0.98 | 0.67 | 0.47 | 4 | 1.145 | 0.979 | 0.824 |
| P40778 | UDP-N-acetylmuramate—L-alanine ligase | MurC | 25.46 | 9 | 1.03 | 0.71 | 0.54 | 6 | 1.173 | 1.528 | 0.522 |
| Q03523 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate—2,6-diaminopimelate ligase | MurE | 37.04 | 14 | 1.02 | 0.74 | 0.55 | 9 | 0.839 | 0.807 | 0.301 |
| P37585 | UDP-N-acetylglucosamine—N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | MurG | 37.47 | 11 | 0.91 | 0.8 | 0.63 | 3 | 0.671 | 0.678 | 0.402 |
| P94556 | Glutamate racemase 1 | RacE | 25.37 | 4 | 0.97 | 0.84 | 0.68 | 3 | 0.974 | 1.024 | 0.487 |
| P96613 | UDP-N-acetylmuramoyl-tripeptide—D-alanyl-D-alanine ligase | MurF | 30.20 | 8 | 1.10 | 0.79 | 0.87 | 3 | 1.689 | 0.646 | 0.752 |
| P0CI73 | Glutamine—fructose-6-phosphate aminotransferase [isomerizing] | GlmS | 30.33 | 15 | 0.92 | 0.79 | 0.53 | 10 | 0.931 | 0.751 | 0.396 |
| P14192 | Bifunctional protein GlmU | GlmU | 23.03 | 8 | 0.93 | 0.83 | 0.58 | 7 | 1.397 | 0.916 | 0.819 |
|
| |||||||||||
| P45693 | Stage V sporulation protein S | SpoVS | 38.37 | 2 | 1.10 | 2.59 | 6.10 | 3 | 5.896 | 5.730 | 7.008 |
| P28015 | Putative septation protein SpoVG | SpoVG | 42.27 | 4 | 0.96 | 1.51 | 4.49 | 2 | 0.955 | 0.713 | 2.268 |
| Q07867 | Cell division protein FtsL | FtsL | 8.55 | 1 | 0.72 | 1.41 | 3.09 | NI | NI | NI | NI |
| P0CI74 | Cell cycle protein GpsB | GpsB | 43.88 | 4 | 0.98 | 1.06 | 1.46 | 2 | 1.042 | 1.439 | 1.621 |
| P06628 | Sporulation initiation phosphotransferase F | SpoOF | 23.39 | 2 | 0.79 | 1.75 | 2.93 | 2 | 0.570 | 1.782 | 2.644 |
| Q01368 | Stage III sporulation protein AB | SpoIIIAB | 5.26 | 1 | 0.89 | 1.29 | 2.02 | NI | NI | NI | NI |
| P06534 | Stage 0 sporulation protein A | SpoOA | 13.86 | 3 | 0.97 | 1.33 | 2.09 | 1 | 1.190 | ||
| P71088 | Sporulation-control protein spo0M | SpoOM | 37.21 | 10 | 1.23 | 1.00 | 1.61 | 5 | 1.135 | 0.964 | 1.712 |
| P39624 | Spore coat polysaccharide biosynthesis protein SpsD | SpsD | 4.84 | 1 | 0.97 | 0.43 | 1.13 | NI | NI | NI | NI |
| P37470 | Peptidyl-tRNA hydrolase | SpoVC | 13.83 | 2 | 1.10 | 0.82 | 0.61 | 3 | 1.844 | 0.577 | 0.570 |
|
| |||||||||||
| O34746 | 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 | FabHA | 45.83 | 13 | 1.01 | 0.56 | 0.38 | 6 | 1.048 | 0.578 | 0.414 |
| O07600 | 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 | FabHB | 18.15 | 6 | 0.94 | 0.54 | 0.41 | 2 | 0.945 | 0.341 | 0.200 |
| P71019 | Malonyl CoA-acyl carrier protein transacylase | FabD | 48.26 | 14 | 0.93 | 0.64 | 0.44 | 13 | 0.916 | 0.558 | 0.457 |
| P54616 | Enoyl-[acyl-carrier-protein] reductase [NADH] FabI | FabI | 51.16 | 11 | 0.91 | 0.65 | 0.54 | 5 | 0.999 | 0.741 | 0.648 |
| O34340 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | FabF | 48.67 | 14 | 1.03 | 0.73 | 0.57 | 11 | 0.927 | 0.747 | 0.732 |
| P51831 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | FabG | 61.79 | 12 | 1.01 | 0.71 | 0.58 | 7 | 0.985 | 0.801 | 0.677 |
|
| |||||||||||
| P37571 | Negative regulator of genetic competence ClpC/MecB | ClpC | 59.88 | 45 | 1.20 | 1.65 | 2.43 | 28 | 1.102 | 1.546 | 1.998 |
| P80244 | ATP-dependent Clp protease proteolytic subunit | ClpP | 43.15 | 8 | 1.09 | 2.07 | 2.26 | 4 | 1.168 | 1.639 | 2.352 |
| P39778 | ATP-dependent protease ATPase subunit ClpY | ClpY | 35.55 | 14 | 1.17 | 1.41 | 1.82 | 5 | 1.552 | 1.520 | 2.026 |
| O31673 | ATP-dependent Clp protease ATP-binding subunit ClpE | ClpE | 16.17 | 5 | 0.95 | 1.72 | 1.76 | NI | NI | NI | NI |
| P39070 | ATP-dependent protease subunit ClpQ | ClpQ | 21.55 | 4 | 1.13 | 1.08 | 1.61 | NI | NI | NI | NI |
| P54617 | Phage shock protein A homolog | YdjF | 58.59 | 11 | 0.76 | 1.22 | 3.09 | 6 | 1.062 | 1.549 | 2.386 |
| P54375 | Superoxide dismutase [Mn] | SodA | 67.82 | 9 | 1.11 | 1.59 | 2.69 | 6 | 1.055 | 1.303 | 2.161 |
| P42297 | Universal stress protein YxiE | YxiE | 45.27 | 5 | 1.19 | 0.95 | 2.34 | 3 | 0.907 | 0.880 | 1.397 |
| P51777 | Cold shock protein CspD | CspD | 89.39 | 5 | 0.92 | 1.22 | 2.25 | 3 | 0.997 | 1.243 | 1.452 |
| P28599 | 10 kDa chaperonin | GroS | 73.40 | 7 | 1.09 | 1.82 | 2.20 | 5 | 1.148 | 1.651 | 2.493 |
| P28598 | 60 kDa chaperonin | GroL | 74.63 | 39 | 1.07 | 1.69 | 2.10 | 24 | 1.079 | 1.498 | 1.955 |
| P39158 | Cold shock protein CspC | CspC | 59.09 | 5 | 0.22 | 0.82 | 1.86 | 1 | 0.181 | 0.832 | 1.756 |
| P81100 | Stress response protein SCP2 | YceC | 37.69 | 6 | 1.05 | 1.30 | 1.74 | 2 | 0.998 | 1.194 | 1.857 |
| P54377 | Probable glycine dehydrogenase [decarboxylating] subunit 2 | GcvPB | 9.43 | 3 | 1.20 | 2.15 | 1.67 | 1 | 0.698 | 2.985 | 2.562 |
| O32221 | Copper chaperone CopZ | CopZ | 68.12 | 3 | 0.66 | 1.04 | 1.63 | 1 | 1.358 | 0.897 | |
| P15874 | Protein GrpE | GrpE | 57.75 | 10 | 0.96 | 1.13 | 1.51 | 4 | 1.710 | 1.716 | 1.163 |
| P80875 | General stress protein 16U | YceD | 49.74 | 6 | 1.05 | 1.30 | 1.50 | 6 | 0.980 | 1.294 | 1.469 |
|
| |||||||||||
| P39120 | Citrate synthase 2 | CitZ | 31.18 | 11 | 1.20 | 3.99 | 7.65 | 7 | 1.448 | 3.869 | 6.546 |
| P09339 | Aconitate hydratase | CitB | 33.22 | 25 | 1.14 | 3.94 | 4.56 | 12 | 1.449 | 4.064 | 3.887 |
| P39126 | Isocitrate dehydrogenase [NADP] | Icd | 44.21 | 20 | 1.10 | 3.06 | 3.53 | 9 | 1.003 | 3.302 | 2.885 |
| P23129 | 2-oxoglutarate dehydrogenase E1 component | OdhA | 35.28 | 27 | 1.37 | 2.90 | 1.96 | 14 | 1.113 | 1.911 | 1.634 |
| P16263 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex | OdhB | 54.44 | 18 | 1.18 | 2.51 | 3.30 | 13 | 1.101 | 1.669 | 2.818 |
| P80865 | Succinyl-CoA ligase [ADP-forming] subunit alpha | SucD | 33.00 | 6 | 1.12 | 2.73 | 3.39 | 4 | 2.458 | 2.642 | 3.074 |
| P80886 | Succinyl-CoA ligase [ADP-forming] subunit beta | SucC | 55.32 | 22 | 1.11 | 3.26 | 4.08 | 14 | 1.185 | 3.907 | 3.806 |
| P08065 | Succinate dehydrogenase flavoprotein subunit | SdhA | 49.32 | 22 | 1.44 | 2.40 | 2.06 | 9 | 1.279 | 1.914 | 2.462 |
| P08066 | Succinate dehydrogenase iron-sulfur subunit | SdhB | 27.27 | 6 | 1.33 | 2.14 | 1.71 | 3 | 1.470 | 2.157 | 1.502 |
|
| |||||||||||
| P29726 | Adenylosuccinate synthetase | PurA | 26.05 | 10 | 1.12 | 0.76 | 0.55 | 6 | 1.569 | 0.736 | 1.302 |
| P12047 | Adenylosuccinate lyase | PurB | 35.27 | 15 | 0.95 | 0.77 | 0.45 | 4 | 1.135 | 0.855 | 0.737 |
| P12046 | Phosphoribosylaminoimidazole-succinocarboxamide synthase | PurC | 4.98 | 1 | 0.61 | 0.95 | 0.62 | NI | NI | NI | NI |
| P12039 | Phosphoribosylamine—glycine ligase | PurD | 12.56 | 4 | 0.72 | 0.91 | 0.62 | NI | NI | NI | NI |
| P12044 | N5-carboxyaminoimidazole ribonucleotide mutase | PurE | 19.75 | 2 | 0.81 | 1.02 | 0.57 | 2 | 0.762 | 0.747 | 1.097 |
| P12048 | Bifunctional purine biosynthesis protein PurH | PurH | 27.54 | 11 | 0.66 | 0.98 | 0.56 | 5 | 0.597 | 1.050 | 0.384 |
| P12042 | Phosphoribosylformylglycinamidine synthase 2 | PurL | 3.10 | 2 | 0.55 | 0.82 | 0.53 | NI | NI | NI | NI |
| P29727 | GMP synthase [glutamine-hydrolyzing] | GuaA | 58.67 | 27 | 1.03 | 0.64 | 0.42 | 16 | 1.074 | 0.652 | 0.493 |
| O05269 | GMP reductase | GuaC | 48.16 | 10 | 1.06 | 1.00 | 0.49 | 4 | 1.495 | 0.572 | 0.608 |
| P14193 | Ribose-phosphate pyrophosphokinase | Prs | 35.65 | 11 | 0.93 | 0.74 | 0.52 | 8 | 0.834 | 0.911 | 0.720 |
* This is a partial list having selected candidates; complete list is provided in supplementary table S2
# Only present in one replicates of iTRAQ data
NI- Not identified in Q-TOF