Literature DB >> 26083740

Correction: Comprehensive Analysis of Temporal Alterations in Cellular Proteome of Bacillus subtilis under Curcumin Treatment.

Panga Jaipal Reddy, Sneha Sinha, Sandipan Ray, Gajanan J Sathe, Aditi Chatterjee, T S Keshava Prasad, Snigdha Dhali, Rapole Srikanth, Dulal Panda, Sanjeeva Srivastava.   

Abstract

[This corrects the article DOI: 10.1371/journal.pone.0120620.].

Entities:  

Year:  2015        PMID: 26083740      PMCID: PMC4471116          DOI: 10.1371/journal.pone.0130782

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


S7 Fig is incorrect. Please view the correct S7 Fig below. There are errors in Table 2. The values provided for Q-TOF data were inadvertently changed. Please see the corrected Table 2 here.
Table 2

Partial list of differentially expressed proteins in B. subtilis due to curcumin treatment obtained from iTRAQ analysis*

UniProt IDName of the proteinGene nameCoverageUni. peptides(Orbitrap)Fold change (Orbitrap)Uni. peptides(Q-TOF)Fold change (QTOF)
20 min60 min120 min20 min60 min120 min
Cell wall synthesis
P70965UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1MurAA35.32130.890.640.41130.8860.6090.303
Q03522UDP-N-acetylmuramoylalanine—D-glutamate ligaseMurD31.04130.980.670.4741.1450.9790.824
P40778UDP-N-acetylmuramate—L-alanine ligaseMurC25.4691.030.710.5461.1731.5280.522
Q03523UDP-N-acetylmuramoyl-L-alanyl-D-glutamate—2,6-diaminopimelate ligaseMurE37.04141.020.740.5590.8390.8070.301
P37585UDP-N-acetylglucosamine—N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferaseMurG37.47110.910.80.6330.6710.6780.402
P94556Glutamate racemase 1RacE25.3740.970.840.6830.9741.0240.487
P96613UDP-N-acetylmuramoyl-tripeptide—D-alanyl-D-alanine ligaseMurF30.2081.100.790.8731.6890.6460.752
P0CI73Glutamine—fructose-6-phosphate aminotransferase [isomerizing]GlmS30.33150.920.790.53100.9310.7510.396
P14192Bifunctional protein GlmUGlmU23.0380.930.830.5871.3970.9160.819
Cell division and Sporulation
P45693Stage V sporulation protein SSpoVS38.3721.102.596.1035.8965.7307.008
P28015Putative septation protein SpoVGSpoVG42.2740.961.514.4920.9550.7132.268
Q07867Cell division protein FtsLFtsL8.5510.721.413.09NINININI
P0CI74Cell cycle protein GpsBGpsB43.8840.981.061.4621.0421.4391.621
P06628Sporulation initiation phosphotransferase FSpoOF23.3920.791.752.9320.5701.7822.644
Q01368Stage III sporulation protein ABSpoIIIAB5.2610.891.292.02NINININI
P06534Stage 0 sporulation protein ASpoOA13.8630.971.332.0911.190
P71088Sporulation-control protein spo0MSpoOM37.21101.231.001.6151.1350.9641.712
P39624Spore coat polysaccharide biosynthesis protein SpsDSpsD4.8410.970.431.13NINININI
P37470Peptidyl-tRNA hydrolaseSpoVC13.8321.100.820.6131.8440.5770.570
Fatty acid synthesis
O347463-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1FabHA45.83131.010.560.3861.0480.5780.414
O076003-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2FabHB18.1560.940.540.4120.9450.3410.200
P71019Malonyl CoA-acyl carrier protein transacylaseFabD48.26140.930.640.44130.9160.5580.457
P54616Enoyl-[acyl-carrier-protein] reductase [NADH] FabIFabI51.16110.910.650.5450.9990.7410.648
O343403-oxoacyl-[acyl-carrier-protein] synthase 2FabF48.67141.030.730.57110.9270.7470.732
P518313-oxoacyl-[acyl-carrier-protein] reductase FabGFabG61.79121.010.710.5870.9850.8010.677
Stress response
P37571Negative regulator of genetic competence ClpC/MecBClpC59.88451.201.652.43281.1021.5461.998
P80244ATP-dependent Clp protease proteolytic subunitClpP43.1581.092.072.2641.1681.6392.352
P39778ATP-dependent protease ATPase subunit ClpYClpY35.55141.171.411.8251.5521.5202.026
O31673ATP-dependent Clp protease ATP-binding subunit ClpEClpE16.1750.951.721.76NINININI
P39070ATP-dependent protease subunit ClpQClpQ21.5541.131.081.61NINININI
P54617Phage shock protein A homologYdjF58.59110.761.223.0961.0621.5492.386
P54375Superoxide dismutase [Mn]SodA67.8291.111.592.6961.0551.3032.161
P42297Universal stress protein YxiEYxiE45.2751.190.952.3430.9070.8801.397
P51777Cold shock protein CspDCspD89.3950.921.222.2530.9971.2431.452
P2859910 kDa chaperoninGroS73.4071.091.822.2051.1481.6512.493
P2859860 kDa chaperoninGroL74.63391.071.692.10241.0791.4981.955
P39158Cold shock protein CspCCspC59.0950.220.821.8610.1810.8321.756
P81100Stress response protein SCP2YceC37.6961.051.301.7420.9981.1941.857
P54377Probable glycine dehydrogenase [decarboxylating] subunit 2GcvPB9.4331.202.151.6710.6982.9852.562
O32221Copper chaperone CopZCopZ68.1230.661.041.631 1.3580.897
P15874Protein GrpEGrpE57.75100.961.131.5141.7101.7161.163
P80875General stress protein 16UYceD49.7461.051.301.5060.9801.2941.469
TCA cycle
P39120Citrate synthase 2CitZ31.18111.203.997.6571.4483.8696.546
P09339Aconitate hydrataseCitB33.22251.143.944.56121.4494.0643.887
P39126Isocitrate dehydrogenase [NADP]Icd44.21201.103.063.5391.0033.3022.885
P231292-oxoglutarate dehydrogenase E1 componentOdhA35.28271.372.901.96141.1131.9111.634
P16263Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complexOdhB54.44181.182.513.30131.1011.6692.818
P80865Succinyl-CoA ligase [ADP-forming] subunit alphaSucD33.0061.122.733.3942.4582.6423.074
P80886Succinyl-CoA ligase [ADP-forming] subunit betaSucC55.32221.113.264.08141.1853.9073.806
P08065Succinate dehydrogenase flavoprotein subunitSdhA49.32221.442.402.0691.2791.9142.462
P08066Succinate dehydrogenase iron-sulfur subunitSdhB27.2761.332.141.7131.4702.1571.502
Nucleotide biosynthesis
P29726Adenylosuccinate synthetasePurA26.05101.120.760.5561.5690.7361.302
P12047Adenylosuccinate lyasePurB35.27150.950.770.4541.1350.8550.737
P12046Phosphoribosylaminoimidazole-succinocarboxamide synthasePurC4.9810.610.950.62NINININI
P12039Phosphoribosylamine—glycine ligasePurD12.5640.720.910.62NINININI
P12044N5-carboxyaminoimidazole ribonucleotide mutasePurE19.7520.811.020.5720.7620.7471.097
P12048Bifunctional purine biosynthesis protein PurHPurH27.54110.660.980.5650.5971.0500.384
P12042Phosphoribosylformylglycinamidine synthase 2PurL3.1020.550.820.53NINININI
P29727GMP synthase [glutamine-hydrolyzing]GuaA58.67271.030.640.42161.0740.6520.493
O05269GMP reductaseGuaC48.16101.061.000.4941.4950.5720.608
P14193Ribose-phosphate pyrophosphokinasePrs35.65110.930.740.5280.8340.9110.720

* This is a partial list having selected candidates; complete list is provided in supplementary table S2

# Only present in one replicates of iTRAQ data

NI- Not identified in Q-TOF

* This is a partial list having selected candidates; complete list is provided in supplementary table S2 # Only present in one replicates of iTRAQ data NI- Not identified in Q-TOF

Quantitative profiles of the differentially expressed proteins (identified in iTRAQ-based quantitative proteomics analysis using Q-TOF) involved in diverse biological processes.

(TIF) Click here for additional data file.
  1 in total

1.  Comprehensive analysis of temporal alterations in cellular proteome of Bacillus subtilis under curcumin treatment.

Authors:  Panga Jaipal Reddy; Sneha Sinha; Sandipan Ray; Gajanan J Sathe; Aditi Chatterjee; T S Keshava Prasad; Snigdha Dhali; Rapole Srikanth; Dulal Panda; Sanjeeva Srivastava
Journal:  PLoS One       Date:  2015-04-14       Impact factor: 3.240

  1 in total

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