Literature DB >> 26082883

A High-resolution Atlas and Statistical Model of the Vocal Tract from Structural MRI.

Jonghye Woo1, Junghoon Lee2, Emi Z Murano3, Fangxu Xing4, Meena Al-Talib5, Maureen Stone6, Jerry L Prince7.   

Abstract

Magnetic resonance imaging (MRI) is an essential tool in the study of muscle anatomy and functional activity in the tongue. Objective assessment of similarities and differences in tongue structure and function has been performed using unnormalized data, but this is biased by the differences in size, shape, and orientation of the structures. To remedy this, we propose a methodology to build a 3D vocal tract atlas based on structural MRI volumes from twenty normal subjects. We first constructed high-resolution volumes from three orthogonal stacks. We then removed extraneous data so that all 3D volumes contained the same anatomy. We used an unbiased diffeomorphic groupwise registration using a cross-correlation similarity metric. Principal component analysis was applied to the deformation fields to create a statistical model from the atlas. Various evaluations and applications were carried out to show the behaviour and utility of the atlas.

Entities:  

Keywords:  MRI; Statistical model; Tongue; Vocal tract atlas

Year:  2015        PMID: 26082883      PMCID: PMC4465978          DOI: 10.1080/21681163.2014.933679

Source DB:  PubMed          Journal:  Comput Methods Biomech Biomed Eng Imaging Vis        ISSN: 2168-1163


  23 in total

1.  Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain.

Authors:  P M Thompson; R P Woods; M S Mega; A W Toga
Journal:  Hum Brain Mapp       Date:  2000-02       Impact factor: 5.038

2.  Segmentation and interpretation of MR brain images: an improved active shape model.

Authors:  N Duta; M Sonka
Journal:  IEEE Trans Med Imaging       Date:  1998-12       Impact factor: 10.048

Review 3.  Towards multimodal atlases of the human brain.

Authors:  Arthur W Toga; Paul M Thompson; Susumu Mori; Katrin Amunts; Karl Zilles
Journal:  Nat Rev Neurosci       Date:  2006-12       Impact factor: 34.870

4.  Measuring tongue motion from tagged cine-MRI using harmonic phase (HARP) processing.

Authors:  Vijay Parthasarathy; Jerry L Prince; Maureen Stone; Emi Z Murano; Moriel Nessaiver
Journal:  J Acoust Soc Am       Date:  2007-01       Impact factor: 1.840

5.  SEMI-AUTOMATIC SEGMENTATION OF THE TONGUE FOR 3D MOTION ANALYSIS WITH DYNAMIC MRI.

Authors:  Junghoon Lee; Jonghye Woo; Fangxu Xing; Emi Z Murano; Maureen Stone; Jerry L Prince
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2013-12-31

6.  Human brain atlas-based multimodal MRI analysis of volumetry, diffusimetry, relaxometry and lesion distribution in multiple sclerosis patients and healthy adult controls: implications for understanding the pathogenesis of multiple sclerosis and consolidation of quantitative MRI results in MS.

Authors:  Khader M Hasan; Indika S Walimuni; Humaira Abid; Sushmita Datta; Jerry S Wolinsky; Ponnada A Narayana
Journal:  J Neurol Sci       Date:  2011-10-05       Impact factor: 3.181

7.  A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T.

Authors:  Paul A Yushkevich; Brian B Avants; John Pluta; Sandhitsu Das; David Minkoff; Dawn Mechanic-Hamilton; Simon Glynn; Stephen Pickup; Weixia Liu; James C Gee; Murray Grossman; John A Detre
Journal:  Neuroimage       Date:  2008-09-18       Impact factor: 6.556

8.  Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

Authors:  B B Avants; C L Epstein; M Grossman; J C Gee
Journal:  Med Image Anal       Date:  2007-06-23       Impact factor: 8.545

9.  Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.

Authors:  Arno Klein; Jesper Andersson; Babak A Ardekani; John Ashburner; Brian Avants; Ming-Chang Chiang; Gary E Christensen; D Louis Collins; James Gee; Pierre Hellier; Joo Hyun Song; Mark Jenkinson; Claude Lepage; Daniel Rueckert; Paul Thompson; Tom Vercauteren; Roger P Woods; J John Mann; Ramin V Parsey
Journal:  Neuroimage       Date:  2009-01-13       Impact factor: 6.556

10.  A digital atlas of the dog brain.

Authors:  Ritobrato Datta; Jongho Lee; Jeffrey Duda; Brian B Avants; Charles H Vite; Ben Tseng; James C Gee; Gustavo D Aguirre; Geoffrey K Aguirre
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

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  18 in total

1.  Atlas-Based Tongue Muscle Correlation Analysis From Tagged and High-Resolution Magnetic Resonance Imaging.

Authors:  Fangxu Xing; Maureen Stone; Tessa Goldsmith; Jerry L Prince; Georges El Fakhri; Jonghye Woo
Journal:  J Speech Lang Hear Res       Date:  2019-07-02       Impact factor: 2.297

2.  Variability in muscle activation of simple speech motions: A biomechanical modeling approach.

Authors:  Negar M Harandi; Jonghye Woo; Maureen Stone; Rafeef Abugharbieh; Sidney Fels
Journal:  J Acoust Soc Am       Date:  2017-04       Impact factor: 1.840

3.  Test-retest repeatability of human speech biomarkers from static and real-time dynamic magnetic resonance imaging.

Authors:  Johannes Töger; Tanner Sorensen; Krishna Somandepalli; Asterios Toutios; Sajan Goud Lingala; Shrikanth Narayanan; Krishna Nayak
Journal:  J Acoust Soc Am       Date:  2017-05       Impact factor: 1.840

4.  Multimodal registration via mutual information incorporating geometric and spatial context.

Authors:  Jonghye Woo; Maureen Stone; Jerry L Prince
Journal:  IEEE Trans Image Process       Date:  2015-02       Impact factor: 10.856

5.  A Sparse Non-Negative Matrix Factorization Framework for Identifying Functional Units of Tongue Behavior From MRI.

Authors:  Jerry L Prince; Maureen Stone; Arnold D Gomez; Jordan R Green; Christopher J Hartnick; Thomas J Brady; Timothy G Reese; Van J Wedeen; Georges El Fakhri
Journal:  IEEE Trans Med Imaging       Date:  2018-09-18       Impact factor: 10.048

6.  Structure and variability in human tongue muscle anatomy.

Authors:  Maureen Stone; Jonghye Woo; Junghoon Lee; Tera Poole; Amy Seagraves; Michael Chung; Eric Kim; Emi Z Murano; Jerry L Prince; Silvia S Blemker
Journal:  Comput Methods Biomech Biomed Eng Imaging Vis       Date:  2016-04-08

7.  Laplace-based modeling of fiber orientation in the tongue.

Authors:  Arnold D Gomez; Nahla Elsaid; Maureen L Stone; Jiachen Zhuo; Jerry L Prince
Journal:  Biomech Model Mechanobiol       Date:  2018-04-19

8.  Relating Speech Production to Tongue Muscle Compressions Using Tagged and High-resolution Magnetic Resonance Imaging.

Authors:  Fangxu Xing; Chuyang Ye; Jonghye Woo; Maureen Stone; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-02-21

9.  A Spatio-Temporal Atlas and Statistical Model of the Tongue During Speech from Cine-MRI.

Authors:  Jonghye Woo; Fangxu Xing; Junghoon Lee; Maureen Stone; Jerry L Prince
Journal:  Comput Methods Biomech Biomed Eng Imaging Vis       Date:  2016-04-28

10.  Construction of An Unbiased Spatio-Temporal Atlas of the Tongue During Speech.

Authors:  Jonghye Woo; Fangxu Xing; Junghoon Lee; Maureen Stone; Jerry L Prince
Journal:  Inf Process Med Imaging       Date:  2015
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