Literature DB >> 26082194

Assessment of endogenous reference gene suitability for serum exosomal microRNA expression analysis in liver carcinoma resection studies.

Yi Li1, Gui-Ming Xiang1, Lin-Lin Liu1, Chang Liu1, Fei Liu1, Dong-Neng Jiang1, Xiao-Yun Pu1.   

Abstract

Serum exosomal microRNAs (miRNAs) have received considerable attention as potential biomarkers for tumor diagnosis. Reverse transcription‑quantitative polymerase chain reaction (RT‑qPCR) is commonly used to detect miRNA expression levels in various types of cancer. One prerequisite for valid RT‑qPCR data is the correct normalization of miRNAs to stably expressed endogenous reference genes (RGs). The study of liver carcinoma resection requires the use of reliable RGs in order to assess the expression levels of serum exosomal target miRNAs. However, the assessment of RG suitability for optimum serum exosomal miRNA expression analysis has yet to be investigated. The present study investigated the expression stability of 10 candidate RGs. The candidate genes included eight miRNAs (miR‑16, miR‑103, miR‑191, let‑7a, miR‑26a, miR‑221, miR‑181a, and miR‑451) and two small RNAs (5S and U6). The stability values of the candidate genes were calculated using the following algorithms: geNorm, NormFinder, BestKeeper, and the comparative ΔCt method. The overall ranking obtained from these analyses revealed that miR‑221, let‑7a, and miR‑26a were appropriate internal RGs for analysis of serum miRNAs in patients with hepatocellular carcinoma. In addition, normalization with miR‑221 and let‑7a combined, as recommended by geNorm, or with miR‑26a, as recommended by NormFinder, increased the accuracy of interpretation of the target miRNA expression levels in hepatopathy studies.

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Year:  2015        PMID: 26082194     DOI: 10.3892/mmr.2015.3919

Source DB:  PubMed          Journal:  Mol Med Rep        ISSN: 1791-2997            Impact factor:   2.952


  19 in total

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Review 2.  Extracellular vesicles: Novel mediator for cell to cell communications in liver pathogenesis.

Authors:  Pradip B Devhare; Ratna B Ray
Journal:  Mol Aspects Med       Date:  2017-11-11

Review 3.  Factors influencing circulating microRNAs as biomarkers for liver diseases.

Authors:  Shalini R Dubey; Tester F Ashavaid; Philip Abraham; Minal Umesh Paradkar
Journal:  Mol Biol Rep       Date:  2022-02-20       Impact factor: 2.742

4.  miR-22-5p and miR-29a-5p Are Reliable Reference Genes for Analyzing Extracellular Vesicle-Associated miRNAs in Adipose-Derived Mesenchymal Stem Cells and Are Stable under Inflammatory Priming Mimicking Osteoarthritis Condition.

Authors:  Enrico Ragni; Carlotta Perucca Orfei; Paola De Luca; Marco Viganò; Alessandra Colombini; Gaia Lugano; Valentina Bollati; Laura de Girolamo
Journal:  Stem Cell Rev Rep       Date:  2019-10       Impact factor: 5.739

Review 5.  Role of exosomes and exosomal microRNAs in hepatocellular carcinoma: Potential in diagnosis and antitumour treatments (Review).

Authors:  Jing-Hua Pan; Hong Zhou; Xiao-Xu Zhao; Hui Ding; Wei Li; Li Qin; Yun-Long Pan
Journal:  Int J Mol Med       Date:  2018-01-11       Impact factor: 4.101

6.  Circulating exosomal microRNAs as prognostic biomarkers for non-small-cell lung cancer.

Authors:  Qingyun Liu; Zubin Yu; Shuai Yuan; Weijia Xie; Chengying Li; Zeyao Hu; Ying Xiang; Na Wu; Long Wu; Li Bai; Yafei Li
Journal:  Oncotarget       Date:  2017-02-21

7.  Identification of miRNA Reference Genes in Extracellular Vesicles from Adipose Derived Mesenchymal Stem Cells for Studying Osteoarthritis.

Authors:  Enrico Ragni; Carlotta Perucca Orfei; Paola De Luca; Alessandra Colombini; Marco Viganò; Gaia Lugano; Valentina Bollati; Laura de Girolamo
Journal:  Int J Mol Sci       Date:  2019-03-05       Impact factor: 5.923

8.  Methods to Investigate miRNA Function: Focus on Platelet Reactivity.

Authors:  Alix Garcia; Sylvie Dunoyer-Geindre; Richard J Fish; Marguerite Neerman-Arbez; Jean-Luc Reny; Pierre Fontana
Journal:  Thromb Haemost       Date:  2020-10-29       Impact factor: 5.249

9.  Exosomes in Epilepsy of Tuberous Sclerosis Complex: Carriers of Pro-Inflammatory MicroRNAs.

Authors:  Daniela Cukovic; Shruti Bagla; Dylan Ukasik; Paul M Stemmer; Bhanu P Jena; Akshata R Naik; Sandeep Sood; Eishi Asano; Aimee Luat; Diane C Chugani; Alan A Dombkowski
Journal:  Noncoding RNA       Date:  2021-07-10

10.  miRNA Reference Genes in Extracellular Vesicles Released from Amniotic Membrane-Derived Mesenchymal Stromal Cells.

Authors:  Enrico Ragni; Carlotta Perucca Orfei; Antonietta Rosa Silini; Alessandra Colombini; Marco Viganò; Ornella Parolini; Laura de Girolamo
Journal:  Pharmaceutics       Date:  2020-04-11       Impact factor: 6.321

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