Literature DB >> 26079751

A Statistical Framework to Infer Delay and Direction of Information Flow from Measurements of Complex Systems.

Johannes Schumacher1, Thomas Wunderle2, Pascal Fries3, Frank Jäkel4, Gordon Pipa5.   

Abstract

In neuroscience, data are typically generated from neural network activity. The resulting time series represent measurements from spatially distributed subsystems with complex interactions, weakly coupled to a high-dimensional global system. We present a statistical framework to estimate the direction of information flow and its delay in measurements from systems of this type. Informed by differential topology, gaussian process regression is employed to reconstruct measurements of putative driving systems from measurements of the driven systems. These reconstructions serve to estimate the delay of the interaction by means of an analytical criterion developed for this purpose. The model accounts for a range of possible sources of uncertainty, including temporally evolving intrinsic noise, while assuming complex nonlinear dependencies. Furthermore, we show that if information flow is delayed, this approach also allows for inference in strong coupling scenarios of systems exhibiting synchronization phenomena. The validity of the method is demonstrated with a variety of delay-coupled chaotic oscillators. In addition, we show that these results seamlessly transfer to local field potentials in cat visual cortex.

Mesh:

Year:  2015        PMID: 26079751     DOI: 10.1162/NECO_a_00756

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  6 in total

1.  Distinguishing time-delayed causal interactions using convergent cross mapping.

Authors:  Hao Ye; Ethan R Deyle; Luis J Gilarranz; George Sugihara
Journal:  Sci Rep       Date:  2015-10-05       Impact factor: 4.379

2.  Limits to Causal Inference with State-Space Reconstruction for Infectious Disease.

Authors:  Sarah Cobey; Edward B Baskerville
Journal:  PLoS One       Date:  2016-12-28       Impact factor: 3.240

3.  Minimising the Kullback-Leibler Divergence for Model Selection in Distributed Nonlinear Systems.

Authors:  Oliver M Cliff; Mikhail Prokopenko; Robert Fitch
Journal:  Entropy (Basel)       Date:  2018-01-23       Impact factor: 2.524

4.  Second waves, social distancing, and the spread of COVID-19 across the USA.

Authors:  Karl J Friston; Thomas Parr; Peter Zeidman; Adeel Razi; Guillaume Flandin; Jean Daunizeau; Oliver J Hulme; Alexander J Billig; Vladimir Litvak; Catherine J Price; Rosalyn J Moran; Christian Lambert
Journal:  Wellcome Open Res       Date:  2021-03-15

5.  Dynamic causal modelling of COVID-19.

Authors:  Karl J Friston; Thomas Parr; Peter Zeidman; Adeel Razi; Guillaume Flandin; Jean Daunizeau; Ollie J Hulme; Alexander J Billig; Vladimir Litvak; Rosalyn J Moran; Cathy J Price; Christian Lambert
Journal:  Wellcome Open Res       Date:  2020-08-07

6.  Networks of Causal Linkage Between Eigenmodes Characterize Behavioral Dynamics of Caenorhabditis elegans.

Authors:  Erik Saberski; Antonia K Bock; Rachel Goodridge; Vitul Agarwal; Tom Lorimer; Scott A Rifkin; George Sugihara
Journal:  PLoS Comput Biol       Date:  2021-09-10       Impact factor: 4.475

  6 in total

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