Literature DB >> 26077371

Human genetics: GTEx pilot quantifies eQTL variation across tissues and individuals.

Orli G Bahcall.   

Abstract

Entities:  

Year:  2015        PMID： 26077371     DOI： 10.1038/nrg3969

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN： 1471-0056            Impact factor:   53.242


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  5 in total

1.  The landscape of genomic imprinting across diverse adult human tissues.

Authors:  Yael Baran; Meena Subramaniam; Anne Biton; Taru Tukiainen; Emily K Tsang; Manuel A Rivas; Matti Pirinen; Maria Gutierrez-Arcelus; Kevin S Smith; Kim R Kukurba; Rui Zhang; Celeste Eng; Dara G Torgerson; Cydney Urbanek; Jin Billy Li; Jose R Rodriguez-Santana; Esteban G Burchard; Max A Seibold; Daniel G MacArthur; Stephen B Montgomery; Noah A Zaitlen; Tuuli Lappalainen
Journal:  Genome Res       Date:  2015-05-07       Impact factor: 9.043

2.  Human genomics. The human transcriptome across tissues and individuals.

Authors:  Marta Melé; Pedro G Ferreira; Ferran Reverter; David S DeLuca; Jean Monlong; Michael Sammeth; Taylor R Young; Jakob M Goldmann; Dmitri D Pervouchine; Timothy J Sullivan; Rory Johnson; Ayellet V Segrè; Sarah Djebali; Anastasia Niarchou; Fred A Wright; Tuuli Lappalainen; Miquel Calvo; Gad Getz; Emmanouil T Dermitzakis; Kristin G Ardlie; Roderic Guigó
Journal:  Science       Date:  2015-05-08       Impact factor: 47.728

3.  Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans.

Authors: 
Journal:  Science       Date:  2015-05-07       Impact factor: 47.728

4.  Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome.

Authors:  Manuel A Rivas; Matti Pirinen; Donald F Conrad; Monkol Lek; Emily K Tsang; Konrad J Karczewski; Julian B Maller; Kimberly R Kukurba; David S DeLuca; Menachem Fromer; Pedro G Ferreira; Kevin S Smith; Rui Zhang; Fengmei Zhao; Eric Banks; Ryan Poplin; Douglas M Ruderfer; Shaun M Purcell; Taru Tukiainen; Eric V Minikel; Peter D Stenson; David N Cooper; Katharine H Huang; Timothy J Sullivan; Jared Nedzel; Carlos D Bustamante; Jin Billy Li; Mark J Daly; Roderic Guigo; Peter Donnelly; Kristin Ardlie; Michael Sammeth; Emmanouil T Dermitzakis; Mark I McCarthy; Stephen B Montgomery; Tuuli Lappalainen; Daniel G MacArthur
Journal:  Science       Date:  2015-05-08       Impact factor: 47.728

5.  Sharing and Specificity of Co-expression Networks across 35 Human Tissues.

Authors:  Emma Pierson; Daphne Koller; Alexis Battle; Sara Mostafavi; Kristin G Ardlie; Gad Getz; Fred A Wright; Manolis Kellis; Simona Volpi; Emmanouil T Dermitzakis
Journal:  PLoS Comput Biol       Date:  2015-05-13       Impact factor: 4.475
  5 in total
  16 in total

Review 1.  Characterization of noncoding regulatory DNA in the human genome.

Authors:  Ran Elkon; Reuven Agami
Journal:  Nat Biotechnol       Date:  2017-08-08       Impact factor: 54.908

Review 2.  Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.

Authors:  Vijender Chaitankar; Gökhan Karakülah; Rinki Ratnapriya; Felipe O Giuste; Matthew J Brooks; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2016-06-11       Impact factor: 21.198

3.  THREE-WAY CLUSTERING OF MULTI-TISSUE MULTI-INDIVIDUAL GENE EXPRESSION DATA USING SEMI-NONNEGATIVE TENSOR DECOMPOSITION.

Authors:  Miaoyan Wang; Jonathan Fischer; Yun S Song
Journal:  Ann Appl Stat       Date:  2019-06-17       Impact factor: 2.083

4.  ZEB2 Shapes the Epigenetic Landscape of Atherosclerosis.

Authors:  Paul Cheng; Robert C Wirka; Lee Shoa Clarke; Quanyi Zhao; Ramendra Kundu; Trieu Nguyen; Surag Nair; Disha Sharma; Hyun-Jung Kim; Huitong Shi; Themistocles Assimes; Juyong Brian Kim; Anshul Kundaje; Thomas Quertermous
Journal:  Circulation       Date:  2022-01-06       Impact factor: 29.690

5.  Expression quantitative trait loci (eQTLs) in human placentas suggest developmental origins of complex diseases.

Authors:  Shouneng Peng; Maya A Deyssenroth; Antonio F Di Narzo; Luca Lambertini; Carmen J Marsit; Jia Chen; Ke Hao
Journal:  Hum Mol Genet       Date:  2017-09-01       Impact factor: 6.150

6.  Leveraging the cell lineage to predict cell-type specificity of regulatory variation from bulk genomics.

Authors:  Gal Yankovitz; Ofir Cohn; Eran Bacharach; Naama Peshes-Yaloz; Yael Steuerman; Fuad A Iraqi; Irit Gat-Viks
Journal:  Genetics       Date:  2021-04-15       Impact factor: 4.562

7.  Gene Set Knowledge Discovery with Enrichr.

Authors:  Zhuorui Xie; Allison Bailey; Maxim V Kuleshov; Daniel J B Clarke; John E Evangelista; Sherry L Jenkins; Alexander Lachmann; Megan L Wojciechowicz; Eryk Kropiwnicki; Kathleen M Jagodnik; Minji Jeon; Avi Ma'ayan
Journal:  Curr Protoc       Date:  2021-03

8.  Human protein secretory pathway genes are expressed in a tissue-specific pattern to match processing demands of the secretome.

Authors:  Amir Feizi; Francesco Gatto; Mathias Uhlen; Jens Nielsen
Journal:  NPJ Syst Biol Appl       Date:  2017-08-18

Review 9.  Transcriptomics resources of human tissues and organs.

Authors:  Mathias Uhlén; Björn M Hallström; Cecilia Lindskog; Adil Mardinoglu; Fredrik Pontén; Jens Nielsen
Journal:  Mol Syst Biol       Date:  2016-04-04       Impact factor: 11.429

10.  Disease-associated KIF3A variants alter gene methylation and expression impacting skin barrier and atopic dermatitis risk.

Authors:  Mariana L Stevens; Zhonghua Zhang; Elisabet Johansson; Samriddha Ray; Amrita Jagpal; Brandy P Ruff; Arjun Kothari; Hua He; Lisa J Martin; Hong Ji; Kathryn Wikenheiser-Brokamp; Matthew T Weirauch; Dorothy M Supp; Jocelyn M Biagini Myers; Gurjit K Khurana Hershey
Journal:  Nat Commun       Date:  2020-08-14       Impact factor: 14.919
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