Literature DB >> 26070506

Cross-species oncogenomics using zebrafish models of cancer.

Richard M White1.   

Abstract

The zebrafish is a relatively recent addition to cancer modeling. These models have now been extensively used in cross-species oncogenomic analyses at both the DNA and RNA levels. The goal of such studies is to identify conserved events that occur in both human and fish tumors which may act as central drivers of tumor phenotypes. Numerous comparisons of somatic DNA changes, using array CGH and exome sequencing, have demonstrated a relatively small set of conserved changes across species. In contrast, striking conservation of RNA expression patterns have been observed between the two species in models such as melanoma, leukemia, and rhabdomyosarcoma. In the future, the zebrafish will increasingly be used to model epigenetic and noncoding aspects of cancer biology.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26070506      PMCID: PMC4603543          DOI: 10.1016/j.gde.2015.04.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  44 in total

1.  Oncogene regulation. An oncogenic super-enhancer formed through somatic mutation of a noncoding intergenic element.

Authors:  Marc R Mansour; Brian J Abraham; Lars Anders; Alla Berezovskaya; Alejandro Gutierrez; Adam D Durbin; Julia Etchin; Lee Lawton; Stephen E Sallan; Lewis B Silverman; Mignon L Loh; Stephen P Hunger; Takaomi Sanda; Richard A Young; A Thomas Look
Journal:  Science       Date:  2014-11-13       Impact factor: 47.728

2.  Ethylnitrosourea induces neoplasia in zebrafish (Danio rerio).

Authors:  L G Beckwith; J L Moore; G S Tsao-Wu; J C Harshbarger; K C Cheng
Journal:  Lab Invest       Date:  2000-03       Impact factor: 5.662

3.  Induction of Mutations by gamma-Rays in Pregonial Germ Cells of Zebrafish Embryos.

Authors:  C Walker; G Streisinger
Journal:  Genetics       Date:  1983-01       Impact factor: 4.562

4.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

5.  Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers.

Authors:  Denes Hnisz; Jurian Schuijers; Charles Y Lin; Abraham S Weintraub; Brian J Abraham; Tong Ihn Lee; James E Bradner; Richard A Young
Journal:  Mol Cell       Date:  2015-03-19       Impact factor: 17.970

6.  Replication, integration and stable germ-line transmission of foreign sequences injected into early zebrafish embryos.

Authors:  G W Stuart; J V McMurray; M Westerfield
Journal:  Development       Date:  1988-06       Impact factor: 6.868

7.  A CRISPR/Cas9 vector system for tissue-specific gene disruption in zebrafish.

Authors:  Julien Ablain; Ellen M Durand; Song Yang; Yi Zhou; Leonard I Zon
Journal:  Dev Cell       Date:  2015-03-05       Impact factor: 12.270

8.  Stable lines of transgenic zebrafish exhibit reproducible patterns of transgene expression.

Authors:  G W Stuart; J R Vielkind; J V McMurray; M Westerfield
Journal:  Development       Date:  1990-07       Impact factor: 6.868

9.  Hematopoietic mutations in the zebrafish.

Authors:  B M Weinstein; A F Schier; S Abdelilah; J Malicki; L Solnica-Krezel; D L Stemple; D Y Stainier; F Zwartkruis; W Driever; M C Fishman
Journal:  Development       Date:  1996-12       Impact factor: 6.868

10.  Genome-wide analysis of noncoding regulatory mutations in cancer.

Authors:  Nils Weinhold; Anders Jacobsen; Nikolaus Schultz; Chris Sander; William Lee
Journal:  Nat Genet       Date:  2014-09-28       Impact factor: 38.330

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  5 in total

1.  Conservation of the Nrf2-Mediated Gene Regulation of Proteasome Subunits and Glucose Metabolism in Zebrafish.

Authors:  Vu Thanh Nguyen; Yuji Fuse; Junya Tamaoki; Shin-Ichi Akiyama; Masafumi Muratani; Yutaka Tamaru; Makoto Kobayashi
Journal:  Oxid Med Cell Longev       Date:  2016-12-27       Impact factor: 6.543

2.  Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN.

Authors:  Yvonne M Bradford; Sabrina Toro; Sridhar Ramachandran; Leyla Ruzicka; Douglas G Howe; Anne Eagle; Patrick Kalita; Ryan Martin; Sierra A Taylor Moxon; Kevin Schaper; Monte Westerfield
Journal:  ILAR J       Date:  2017-07-01

3.  Chromatin immunoprecipitation and an open chromatin assay in zebrafish erythrocytes.

Authors:  S Yang; C J Ott; M P Rossmann; M Superdock; L I Zon; Y Zhou
Journal:  Methods Cell Biol       Date:  2016-06-20       Impact factor: 1.441

Review 4.  Use of Zebrafish Models to Boost Research in Rare Genetic Diseases.

Authors:  Lucie Crouzier; Elodie M Richard; Jo Sourbron; Lieven Lagae; Tangui Maurice; Benjamin Delprat
Journal:  Int J Mol Sci       Date:  2021-12-12       Impact factor: 5.923

5.  Morphological, behavioral and cellular analyses revealed different phenotypes in Wolfram syndrome wfs1a and wfs1b zebrafish mutant lines.

Authors:  Lucie Crouzier; Elodie M Richard; Camille Diez; Hala Alzaeem; Morgane Denus; Nicolas Cubedo; Thomas Delaunay; Emily Glendenning; Sarah Baxendale; Jean-Charles Liévens; Tanya T Whitfield; Tangui Maurice; Benjamin Delprat
Journal:  Hum Mol Genet       Date:  2022-08-23       Impact factor: 5.121

  5 in total

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