Literature DB >> 26066514

Vertical Distribution of Soil Denitrifying Communities in a Wet Sclerophyll Forest under Long-Term Repeated Burning.

Xian Liu1, Chengrong Chen2, Weijin Wang3, Jane M Hughes4, Tom Lewis5, Enqing Hou6, Jupei Shen1.   

Abstract

Soil biogeochemical cycles are largely mediated by microorganisms, while fire significantly modifies biogeochemical cycles mainly via altering microbial community and substrate availability. Majority of studies on fire effects have focused on the surface soil; therefore, our understanding of the vertical distribution of microbial communities and the impacts of fire on nitrogen (N) dynamics in the soil profile is limited. Here, we examined the changes of soil denitrification capacity (DNC) and denitrifying communities with depth under different burning regimes, and their interaction with environmental gradients along the soil profile. Results showed that soil depth had a more pronounced impact than the burning treatment on the bacterial community size. The abundance of 16S rRNA and denitrification genes (narG, nirK, and nirS) declined exponentially with soil depth. Surprisingly, the nosZ-harboring denitrifiers were enriched in the deeper soil layers, which was likely to indicate that the nosZ-harboring denitrifiers could better adapt to the stress conditions (i.e., oxygen deficiency, nutrient limitation, etc.) than other denitrifiers. Soil nutrients, including dissolved organic carbon (DOC), total soluble N (TSN), ammonium (NH(4)(+)), and nitrate (NO(3)(-)), declined significantly with soil depth, which probably contributed to the vertical distribution of denitrifying communities. Soil DNC decreased significantly with soil depth, which was negligible in the depths below 20 cm. These findings have provided new insights into niche separation of the N-cycling functional guilds along the soil profile, under a varied fire disturbance regime.

Entities:  

Keywords:  Denitrification capacity; N-cycling microbial community; Niche separation; Prescribed burning; Soil environmental factors; Soil profile

Mesh:

Substances:

Year:  2015        PMID: 26066514     DOI: 10.1007/s00248-015-0639-y

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  17 in total

1.  Functional microbial community response to nutrient pulses by artificial groundwater recharge practice in surface soils and subsoils.

Authors:  Kirsten Schütz; Ellen Kandeler; Peter Nagel; Stefan Scheu; Liliane Ruess
Journal:  FEMS Microbiol Ecol       Date:  2010-06       Impact factor: 4.194

2.  Distribution of bacteria and nitrogen-cycling microbial communities along constructed Technosol depth-profiles.

Authors:  Farhan Hafeez; Aymé Spor; Marie-Christine Breuil; Christophe Schwartz; Fabrice Martin-Laurent; Laurent Philippot
Journal:  J Hazard Mater       Date:  2012-07-01       Impact factor: 10.588

3.  Burning fire-prone Mediterranean shrublands: immediate changes in soil microbial community structure and ecosystem functions.

Authors:  M Goberna; C García; H Insam; M T Hernández; M Verdú
Journal:  Microb Ecol       Date:  2011-12-28       Impact factor: 4.552

4.  Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.

Authors:  S Henry; D Bru; B Stres; S Hallet; L Philippot
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

Review 5.  The biological role of nitric oxide in bacteria.

Authors:  W G Zumft
Journal:  Arch Microbiol       Date:  1993       Impact factor: 2.552

Review 6.  Cell biology and molecular basis of denitrification.

Authors:  W G Zumft
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

7.  Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

Authors:  Christopher M Jones; Blaz Stres; Magnus Rosenquist; Sara Hallin
Journal:  Mol Biol Evol       Date:  2008-07-08       Impact factor: 16.240

Review 8.  Denitrifying genes in bacterial and Archaeal genomes.

Authors:  Laurent Philippot
Journal:  Biochim Biophys Acta       Date:  2002-09-27

9.  Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples.

Authors:  G Braker; A Fesefeldt; K P Witzel
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

10.  Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom).

Authors:  Liang F Dong; Cindy J Smith; Sokratis Papaspyrou; Andrew Stott; A Mark Osborn; David B Nedwell
Journal:  Appl Environ Microbiol       Date:  2009-03-20       Impact factor: 4.792

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  3 in total

1.  Short-term response of the soil bacterial community to differing wildfire severity in Pinus tabulaeformis stands.

Authors:  Weike Li; Shukui Niu; Xiaodong Liu; Jianming Wang
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

2.  Metagenomic analysis reveals the different characteristics of microbial communities inside and outside the karst tiankeng.

Authors:  Cong Jiang; Xiao-Rui Sun; Jie Feng; Su-Feng Zhu; Wei Shui
Journal:  BMC Microbiol       Date:  2022-04-26       Impact factor: 4.465

3.  Tree Plantation Systems Influence Nitrogen Retention and the Abundance of Nitrogen Functional Genes in the Solomon Islands.

Authors:  Frédérique Reverchon; Shahla H Bai; Xian Liu; Timothy J Blumfield
Journal:  Front Microbiol       Date:  2015-12-22       Impact factor: 5.640

  3 in total

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