Literature DB >> 26065654

Genomic and epigenomic heterogeneity in chronic lymphocytic leukemia.

Romain Guièze1, Catherine J Wu2.   

Abstract

Defining features of chronic lymphocytic leukemia (CLL) are not only its immunophenotype of CD19(+)CD5(+)CD23(+)sIgdim expressing clonal mature B cells but also its highly variable clinical course. In recent years, advances in massively parallel sequencing technologies have led to rapid progress in our understanding of the CLL genome and epigenome. Overall, these studies have clearly demarcated not only the vast degree of genetic and epigenetic heterogeneity among individuals with CLL but also even within individual patient leukemias. We herein review the rapidly growing series of studies assessing the genetic and epigenetic features of CLL within clinically defined periods of its growth. These studies strongly suggest an evolving spectrum of lesions over time and that these features may have clinical impact.
© 2015 by The American Society of Hematology.

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Year:  2015        PMID: 26065654      PMCID: PMC4513249          DOI: 10.1182/blood-2015-02-585042

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  86 in total

1.  SF3B1 mutations correlated to cytogenetics and mutations in NOTCH1, FBXW7, MYD88, XPO1 and TP53 in 1160 untreated CLL patients.

Authors:  S Jeromin; S Weissmann; C Haferlach; F Dicker; K Bayer; V Grossmann; T Alpermann; A Roller; A Kohlmann; T Haferlach; W Kern; S Schnittger
Journal:  Leukemia       Date:  2013-09-12       Impact factor: 11.528

2.  TP53, SF3B1, and NOTCH1 mutations and outcome of allotransplantation for chronic lymphocytic leukemia: six-year follow-up of the GCLLSG CLL3X trial.

Authors:  Peter Dreger; Andrea Schnaiter; Thorsten Zenz; Sebastian Böttcher; Marianna Rossi; Peter Paschka; Andreas Bühler; Sascha Dietrich; Raymonde Busch; Matthias Ritgen; Donald Bunjes; Matthias Zeis; Michael Stadler; Lutz Uharek; Christof Scheid; Ute Hegenbart; Michael Hallek; Michael Kneba; Norbert Schmitz; Hartmut Döhner; Stephan Stilgenbauer
Journal:  Blood       Date:  2013-02-22       Impact factor: 22.113

3.  Evolution and impact of subclonal mutations in chronic lymphocytic leukemia.

Authors:  Dan A Landau; Scott L Carter; Petar Stojanov; Aaron McKenna; Kristen Stevenson; Michael S Lawrence; Carrie Sougnez; Chip Stewart; Andrey Sivachenko; Lili Wang; Youzhong Wan; Wandi Zhang; Sachet A Shukla; Alexander Vartanov; Stacey M Fernandes; Gordon Saksena; Kristian Cibulskis; Bethany Tesar; Stacey Gabriel; Nir Hacohen; Matthew Meyerson; Eric S Lander; Donna Neuberg; Jennifer R Brown; Gad Getz; Catherine J Wu
Journal:  Cell       Date:  2013-02-14       Impact factor: 41.582

4.  Biallelic ATM inactivation significantly reduces survival in patients treated on the United Kingdom Leukemia Research Fund Chronic Lymphocytic Leukemia 4 trial.

Authors:  Anna Skowronska; Anton Parker; Gulshanara Ahmed; Ceri Oldreive; Zadie Davis; Sue Richards; Martin Dyer; Estella Matutes; David Gonzalez; A Malcolm R Taylor; Paul Moss; Peter Thomas; David Oscier; Tatjana Stankovic
Journal:  J Clin Oncol       Date:  2012-10-22       Impact factor: 44.544

5.  450K-array analysis of chronic lymphocytic leukemia cells reveals global DNA methylation to be relatively stable over time and similar in resting and proliferative compartments.

Authors:  N Cahill; A-C Bergh; M Kanduri; H Göransson-Kultima; L Mansouri; A Isaksson; F Ryan; K E Smedby; G Juliusson; C Sundström; A Rosén; R Rosenquist
Journal:  Leukemia       Date:  2012-08-27       Impact factor: 11.528

6.  Autologous CLL cell vaccination early after transplant induces leukemia-specific T cells.

Authors:  Ute E Burkhardt; Ursula Hainz; Kristen Stevenson; Natalie R Goldstein; Mildred Pasek; Masayasu Naito; Di Wu; Vincent T Ho; Anselmo Alonso; Naa Norkor Hammond; Jessica Wong; Quinlan L Sievers; Ana Brusic; Sean M McDonough; Wanyong Zeng; Ann Perrin; Jennifer R Brown; Christine M Canning; John Koreth; Corey Cutler; Philippe Armand; Donna Neuberg; Jeng-Shin Lee; Joseph H Antin; Richard C Mulligan; Tetsuro Sasada; Jerome Ritz; Robert J Soiffer; Glenn Dranoff; Edwin P Alyea; Catherine J Wu
Journal:  J Clin Invest       Date:  2013-08-05       Impact factor: 14.808

7.  The clinical significance of NOTCH1 and SF3B1 mutations in the UK LRF CLL4 trial.

Authors:  David G Oscier; Matthew J J Rose-Zerilli; Nils Winkelmann; David Gonzalez de Castro; Belen Gomez; Jade Forster; Helen Parker; Anton Parker; Anne Gardiner; Andrew Collins; Monica Else; Nicholas C P Cross; Daniel Catovsky; Jonathan C Strefford
Journal:  Blood       Date:  2012-10-18       Impact factor: 22.113

Review 8.  Clonal evolution in hematological malignancies and therapeutic implications.

Authors:  D A Landau; S L Carter; G Getz; C J Wu
Journal:  Leukemia       Date:  2013-08-27       Impact factor: 11.528

9.  Charting a dynamic DNA methylation landscape of the human genome.

Authors:  Michael J Ziller; Hongcang Gu; Fabian Müller; Julie Donaghey; Linus T-Y Tsai; Oliver Kohlbacher; Philip L De Jager; Evan D Rosen; David A Bennett; Bradley E Bernstein; Andreas Gnirke; Alexander Meissner
Journal:  Nature       Date:  2013-08-07       Impact factor: 49.962

10.  Genetic lesions associated with chronic lymphocytic leukemia transformation to Richter syndrome.

Authors:  Giulia Fabbri; Hossein Khiabanian; Antony B Holmes; Jiguang Wang; Monica Messina; Charles G Mullighan; Laura Pasqualucci; Raul Rabadan; Riccardo Dalla-Favera
Journal:  J Exp Med       Date:  2013-10-14       Impact factor: 14.307

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  53 in total

1.  GLP overexpression is associated with poor prognosis in Chronic Lymphocytic Leukemia and its inhibition induces leukemic cell death.

Authors:  Juliana Carvalho Alves-Silva; Juliana Lott de Carvalho; Doralina Amaral Rabello; Teresa Raquel Tavares Serejo; Eduardo Magalhaes Rego; Francisco Assis Rocha Neves; Antonio Roberto Lucena-Araujo; Fábio Pittella-Silva; Felipe Saldanha-Araujo
Journal:  Invest New Drugs       Date:  2018-05-31       Impact factor: 3.850

Review 2.  The molecular pathogenesis of chronic lymphocytic leukaemia.

Authors:  Giulia Fabbri; Riccardo Dalla-Favera
Journal:  Nat Rev Cancer       Date:  2016-03       Impact factor: 60.716

3.  Extracellular vesicles released from chronic lymphocytic leukemia cells exhibit a disease relevant mRNA signature and transfer mRNA to bystander cells.

Authors:  Katrin S Reiners; Olga Shatnyeva; Elena Vasyutina; Teresa Bösl; Hinrich P Hansen; Michael Hallek; Marco Herling; Elke Pogge von Strandmann
Journal:  Haematologica       Date:  2016-11-17       Impact factor: 9.941

4.  Altered patterns of global protein synthesis and translational fidelity in RPS15-mutated chronic lymphocytic leukemia.

Authors:  Gabriel Bretones; Miguel G Álvarez; Javier R Arango; David Rodríguez; Ferran Nadeu; Miguel A Prado; Rafael Valdés-Mas; Diana A Puente; Joao A Paulo; Julio Delgado; Neus Villamor; Armando López-Guillermo; Daniel J Finley; Steven P Gygi; Elías Campo; Víctor Quesada; Carlos López-Otín
Journal:  Blood       Date:  2018-09-04       Impact factor: 22.113

Review 5.  Clinical utility of recently identified diagnostic, prognostic, and predictive molecular biomarkers in mature B-cell neoplasms.

Authors:  Arantza Onaindia; L Jeffrey Medeiros; Keyur P Patel
Journal:  Mod Pathol       Date:  2017-06-30       Impact factor: 7.842

6.  ROR1-targeted delivery of miR-29b induces cell cycle arrest and therapeutic benefit in vivo in a CLL mouse model.

Authors:  Chi-Ling Chiang; Swagata Goswami; Frank W Frissora; Zhiliang Xie; Pearlly S Yan; Ralf Bundschuh; Logan A Walker; Xiaomeng Huang; Rajeswaran Mani; Xiaokui M Mo; Sivasubramanian Baskar; Christoph Rader; Mitch A Phelps; Guido Marcucci; John C Byrd; L James Lee; Natarajan Muthusamy
Journal:  Blood       Date:  2019-05-31       Impact factor: 22.113

7.  Clonal dynamics in chronic lymphocytic leukemia.

Authors:  Catherine Gutierrez; Catherine J Wu
Journal:  Blood Adv       Date:  2019-11-26

Review 8.  Coevolution of Leukemia and Host Immune Cells in Chronic Lymphocytic Leukemia.

Authors:  Noelia Purroy; Catherine J Wu
Journal:  Cold Spring Harb Perspect Med       Date:  2017-04-03       Impact factor: 6.915

Review 9.  Clonal dynamics in chronic lymphocytic leukemia.

Authors:  Catherine Gutierrez; Catherine J Wu
Journal:  Hematology Am Soc Hematol Educ Program       Date:  2019-12-06

10.  CLL intraclonal fractions exhibit established and recently acquired patterns of DNA methylation.

Authors:  Boris A Bartholdy; Xiahoua Wang; Xiao-Jie Yan; Marién Pascual; Manxia Fan; Jacqueline Barrientos; Steven L Allen; Jose Angel Martinez-Climent; Kanti R Rai; Nicholas Chiorazzi; Matthew D Scharff; Sergio Roa
Journal:  Blood Adv       Date:  2020-03-10
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