Literature DB >> 26061408

Threading DNA through nanopores for biosensing applications.

Maria Fyta1.   

Abstract

This review outlines the recent achievements in the field of nanopore research. Nanopores are typically used in single-molecule experiments and are believed to have a high potential to realize an ultra-fast and very cheap genome sequencer. Here, the various types of nanopore materials, ranging from biological to 2D nanopores are discussed together with their advantages and disadvantages. These nanopores can utilize different protocols to read out the DNA nucleobases. Although, the first nanopore devices have reached the market, many still have issues which do not allow a full realization of a nanopore sequencer able to sequence the human genome in about a day. Ways to control the DNA, its dynamics and speed as the biomolecule translocates the nanopore in order to increase the signal-to-noise ratio in the reading-out process are examined in this review. Finally, the advantages, as well as the drawbacks in distinguishing the DNA nucleotides, i.e., the genetic information, are presented in view of their importance in the field of nanopore sequencing.

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Year:  2015        PMID: 26061408     DOI: 10.1088/0953-8984/27/27/273101

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  6 in total

1.  Detection of methylation on dsDNA using nanopores in a MoS2 membrane.

Authors:  Jiwook Shim; Shouvik Banerjee; Hu Qiu; Kirby K H Smithe; David Estrada; Julian Bello; Eric Pop; Klaus Schulten; Rashid Bashir
Journal:  Nanoscale       Date:  2017-10-12       Impact factor: 7.790

Review 2.  Advanced Nanoscale Approaches to Single-(Bio)entity Sensing and Imaging.

Authors:  Marta Maria Pereira da Silva Neves; Daniel Martín-Yerga
Journal:  Biosensors (Basel)       Date:  2018-10-26

3.  Simulating DNA Chip Design Using All-Electronic Graphene-Based Substrates.

Authors:  Ernane de Freitas Martins; Gustavo Troiano Feliciano; Ralph Hendrik Scheicher; Alexandre Reily Rocha
Journal:  Molecules       Date:  2019-03-08       Impact factor: 4.411

Review 4.  Epigenetic tumor heterogeneity in the era of single-cell profiling with nanopore sequencing.

Authors:  Yohannis Wondwosen Ahmed; Berhan Ababaw Alemu; Sisay Addisu Bekele; Solomon Tebeje Gizaw; Muluken Fekadie Zerihun; Endriyas Kelta Wabalo; Maria Degef Teklemariam; Tsehayneh Kelemu Mihrete; Endris Yibru Hanurry; Tensae Gebru Amogne; Assaye Desalegne Gebrehiwot; Tamirat Nida Berga; Ebsitu Abate Haile; Dessiet Oma Edo; Bizuwork Derebew Alemu
Journal:  Clin Epigenetics       Date:  2022-08-27       Impact factor: 7.259

5.  Theoretical assessment of feasibility to sequence DNA through interlayer electronic tunneling transport at aligned nanopores in bilayer graphene.

Authors:  Jariyanee Prasongkit; Gustavo T Feliciano; Alexandre R Rocha; Yuhui He; Tanakorn Osotchan; Rajeev Ahuja; Ralph H Scheicher
Journal:  Sci Rep       Date:  2015-12-04       Impact factor: 4.379

6.  Functionalized Nanogap for DNA Read-Out: Nucleotide Rotation and Current-Voltage Curves.

Authors:  Frank C Maier; Maria Fyta
Journal:  Chemphyschem       Date:  2020-08-20       Impact factor: 3.520

  6 in total

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