Literature DB >> 26058487

Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH.

Taiga Fujii1, Naoki Sugimoto.   

Abstract

The stability of i-motif structures at neutral pH is of interest due to the potential of these structures to impact gene expression. A systematic investigation of loop sequence and length revealed that certain loop nucleobases stabilize i-motif quadruplexes.

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Year:  2015        PMID： 26058487     DOI： 10.1039/c5cp02794b

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN： 1463-9076            Impact factor:   3.676


  12 in total

1.  i-Clamp phenoxazine for the fine tuning of DNA i-motif stability.

Authors:  Vladimir B Tsvetkov; Timofei S Zatsepin; Evgeny S Belyaev; Yury I Kostyukevich; George V Shpakovski; Victor V Podgorsky; Galina E Pozmogova; Anna M Varizhuk; Andrey V Aralov
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

2.  Identification of multiple genomic DNA sequences which form i-motif structures at neutral pH.

Authors:  Elisé P Wright; Julian L Huppert; Zoë A E Waller
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

3.  Rapid Screen of Potential i-Motif Forming Sequences in DNA Repair Gene Promoters.

Authors:  R Aaron Rogers; Aaron M Fleming; Cynthia J Burrows
Journal:  ACS Omega       Date:  2018-08-21

4.  i-Motif DNA: structural features and significance to cell biology.

Authors:  Hala Abou Assi; Miguel Garavís; Carlos González; Masad J Damha
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

5.  Systematic investigation of sequence requirements for DNA i-motif formation.

Authors:  Petra Školáková; Daniel Renčiuk; Jan Palacký; Daniel Krafčík; Zuzana Dvořáková; Iva Kejnovská; Klára Bednářová; Michaela Vorlíčková
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

6.  A DNA G-quadruplex/i-motif hybrid.

Authors:  Betty Chu; Daoning Zhang; Paul J Paukstelis
Journal:  Nucleic Acids Res       Date:  2019-12-16       Impact factor: 16.971

7.  In vivo visualization of the i-motif DNA secondary structure in the Bombyx mori testis.

Authors:  Wenhuan Tang; Kangkang Niu; Guoxing Yu; Ying Jin; Xian Zhang; Yuling Peng; Shuna Chen; Huimin Deng; Sheng Li; Jian Wang; Qisheng Song; Qili Feng
Journal:  Epigenetics Chromatin       Date:  2020-03-05       Impact factor: 4.954

8.  Epigenetic modification of cytosines fine tunes the stability of i-motif DNA.

Authors:  Elisé P Wright; Mahmoud A S Abdelhamid; Michelle O Ehiabor; Melanie C Grigg; Kelly Irving; Nicole M Smith; Zoë A E Waller
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

9.  Re-evaluation of G-quadruplex propensity with G4Hunter.

Authors:  Amina Bedrat; Laurent Lacroix; Jean-Louis Mergny
Journal:  Nucleic Acids Res       Date:  2016-01-20       Impact factor: 16.971

10.  i-Motif of cytosine-rich human telomere DNA fragments containing natural base lesions.

Authors:  Zuzana Dvoráková; Daniel Renciuk; Iva Kejnovská; Petra Školáková; Klára Bednárová; Janos Sagi; Michaela Vorlícková
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971
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