Literature DB >> 26057800

Crystallization of interleukin-18 for structure-based inhibitor design.

Brian Krumm1, Xiangzhi Meng2, Yan Xiang2, Junpeng Deng1.   

Abstract

Interleukin-18 (IL-18) is a pleiotropic pro-inflammatory cytokine belonging to the IL-1 superfamily. IL-18 plays an important role in host innate and acquired immune defense, with its activity being modulated in vivo by its naturally occurring antagonist IL-18 binding protein (IL-18BP). Recent crystal structures of human IL-18 (hIL-18) in complex with its antagonist or cognate receptor(s) have revealed a conserved binding interface on hIL-18 representing a promising drug target. An important step in this process is obtaining crystals of apo hIL-18 or hIL-18 in complex with small-molecule inhibitors, preferably under low ionic strength conditions. In this study, surface-entropy reduction (SER) and rational protein design were employed to facilitate the crystallization of hIL-18. The results provide an excellent platform for structure-based drug design.

Entities:  

Keywords:  cytokines; immune defense; interleukin-18; surface-entropy reduction

Mesh:

Substances:

Year:  2015        PMID: 26057800      PMCID: PMC4461335          DOI: 10.1107/S2053230X15006871

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  33 in total

1.  Variola virus IL-18 binding protein interacts with three human IL-18 residues that are part of a binding site for human IL-18 receptor alpha subunit.

Authors:  Xiangzhi Meng; Michael Leman; Yan Xiang
Journal:  Virology       Date:  2006-09-18       Impact factor: 3.616

Review 2.  How many drug targets are there?

Authors:  John P Overington; Bissan Al-Lazikani; Andrew L Hopkins
Journal:  Nat Rev Drug Discov       Date:  2006-12       Impact factor: 84.694

3.  Toward rational protein crystallization: A Web server for the design of crystallizable protein variants.

Authors:  Lukasz Goldschmidt; David R Cooper; Zygmunt S Derewenda; David Eisenberg
Journal:  Protein Sci       Date:  2007-08       Impact factor: 6.725

4.  Correspondence of the functional epitopes of poxvirus and human interleukin-18-binding proteins.

Authors:  Y Xiang; B Moss
Journal:  J Virol       Date:  2001-10       Impact factor: 5.103

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Structural basis for antagonism of human interleukin 18 by poxvirus interleukin 18-binding protein.

Authors:  Brian Krumm; Xiangzhi Meng; Yongchao Li; Yan Xiang; Junpeng Deng
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

7.  The structure and binding mode of interleukin-18.

Authors:  Zenichiro Kato; JunGoo Jee; Hiroaki Shikano; Masaki Mishima; Izuru Ohki; Hidenori Ohnishi; Ailian Li; Kazuyuki Hashimoto; Eiji Matsukuma; Kentaro Omoya; Yutaka Yamamoto; Teruyo Yoneda; Takane Hara; Naomi Kondo; Masahiro Shirakawa
Journal:  Nat Struct Biol       Date:  2003-10-05

8.  The structural basis for receptor recognition of human interleukin-18.

Authors:  Naotaka Tsutsumi; Takeshi Kimura; Kyohei Arita; Mariko Ariyoshi; Hidenori Ohnishi; Takahiro Yamamoto; Xiaobing Zuo; Katsumi Maenaka; Enoch Y Park; Naomi Kondo; Masahiro Shirakawa; Hidehito Tochio; Zenichiro Kato
Journal:  Nat Commun       Date:  2014-12-15       Impact factor: 14.919

9.  A unique bivalent binding and inhibition mechanism by the yatapoxvirus interleukin 18 binding protein.

Authors:  Brian Krumm; Xiangzhi Meng; Zhixin Wang; Yan Xiang; Junpeng Deng
Journal:  PLoS Pathog       Date:  2012-08-23       Impact factor: 6.823

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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