Literature DB >> 26057674

DATASW, a tool for HPLC-SAXS data analysis.

Alexander V Shkumatov1, Sergei V Strelkov1.   

Abstract

Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement the high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS experiments using a sliding window of a user-specified size, calculates overall parameters [I(0), Rg, Dmax and molecular weight] and predicts the folding state (folded/unfolded) of the sample. Applications of DATASW are illustrated for several proteins with various oligomerization behaviours recorded on different beamlines. DATASW binaries for major operating systems can be downloaded from http://datasw.sourceforge.net/.

Keywords:  HPLC; SAXS; oligomer; processing

Mesh:

Year:  2015        PMID: 26057674     DOI: 10.1107/S1399004715007154

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  15 in total

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8.  US-SOMO HPLC-SAXS module: dealing with capillary fouling and extraction of pure component patterns from poorly resolved SEC-SAXS data.

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Journal:  J Appl Crystallogr       Date:  2016-09-01       Impact factor: 3.304

9.  ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions.

Authors:  D Franke; M V Petoukhov; P V Konarev; A Panjkovich; A Tuukkanen; H D T Mertens; A G Kikhney; N R Hajizadeh; J M Franklin; C M Jeffries; D I Svergun
Journal:  J Appl Crystallogr       Date:  2017-06-26       Impact factor: 3.304

10.  A homologue of the Parkinson's disease-associated protein LRRK2 undergoes a monomer-dimer transition during GTP turnover.

Authors:  Egon Deyaert; Lina Wauters; Giambattista Guaitoli; Albert Konijnenberg; Margaux Leemans; Susanne Terheyden; Arsen Petrovic; Rodrigo Gallardo; Laura M Nederveen-Schippers; Panagiotis S Athanasopoulos; Henderikus Pots; Peter J M Van Haastert; Frank Sobott; Christian Johannes Gloeckner; Rouslan Efremov; Arjan Kortholt; Wim Versées
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