Literature DB >> 26056849

Visualization of RNA-Quadruplexes in Live Cells.

Aurélien Laguerre1, Kyle Hukezalie2, Pascale Winckler3, Fares Katranji1, Gaëtan Chanteloup1, Marc Pirrotta1, Jean-Marie Perrier-Cornet3, Judy M Y Wong2, David Monchaud1.   

Abstract

Visualization of DNA and RNA quadruplex formation in human cells was demonstrated recently with different quadruplex-specific antibodies. Despite the significant interest in these immunodetection approaches, dynamic detection of quadruplex in live cells remains elusive. Here, we report on NaphthoTASQ (N-TASQ), a next-generation quadruplex ligand that acts as a multiphoton turn-on fluorescent probe. Single-step incubation of human and mouse cells with N-TASQ enables the direct detection of RNA-quadruplexes in untreated cells (no fixation, permeabilization or mounting steps), thus offering a unique, unbiased visualization of quadruplexes in live cells.

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Year:  2015        PMID: 26056849     DOI: 10.1021/jacs.5b03413

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  53 in total

1.  Cancer mutational burden is shaped by G4 DNA, replication stress and mitochondrial dysfunction.

Authors:  Albino Bacolla; Zu Ye; Zamal Ahmed; John A Tainer
Journal:  Prog Biophys Mol Biol       Date:  2019-03-14       Impact factor: 3.667

2.  Regulation of autophagy by DNA G-quadruplexes.

Authors:  Pauline Lejault; Jose F Moruno-Manchon; Sree M Vemu; Pedram Honarpisheh; Liang Zhu; Nayun Kim; Akihiko Urayama; David Monchaud; Louise D McCullough; Andrey S Tsvetkov
Journal:  Autophagy       Date:  2020-06-10       Impact factor: 16.016

3.  Conformation-sensitive nucleoside analogues as topology-specific fluorescence turn-on probes for DNA and RNA G-quadruplexes.

Authors:  Arun A Tanpure; Seergazhi G Srivatsan
Journal:  Nucleic Acids Res       Date:  2015-07-21       Impact factor: 16.971

4.  Coexistence of two main folded G-quadruplexes within a single G-rich domain in the EGFR promoter.

Authors:  Maria L Greco; Anita Kotar; Riccardo Rigo; Camilla Cristofari; Janez Plavec; Claudia Sissi
Journal:  Nucleic Acids Res       Date:  2017-09-29       Impact factor: 16.971

5.  Promoter G-quadruplexes and transcription factors cooperate to shape the cell type-specific transcriptome.

Authors:  Sara Lago; Matteo Nadai; Filippo M Cernilogar; Maryam Kazerani; Helena Domíniguez Moreno; Gunnar Schotta; Sara N Richter
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

6.  A Dual-App Nucleoside Probe Provides Structural Insights into the Human Telomeric Overhang in Live Cells.

Authors:  Sudeshna Manna; Debayan Sarkar; Seergazhi G Srivatsan
Journal:  J Am Chem Soc       Date:  2018-09-21       Impact factor: 15.419

7.  Vinyluridine as a Versatile Chemoselective Handle for the Post-transcriptional Chemical Functionalization of RNA.

Authors:  Jerrin Thomas George; Seergazhi G Srivatsan
Journal:  Bioconjug Chem       Date:  2017-04-26       Impact factor: 4.774

8.  The interactions between a small molecule and G-quadruplexes are visualized by fluorescence lifetime imaging microscopy.

Authors:  Arun Shivalingam; M Angeles Izquierdo; Alix Le Marois; Aurimas Vyšniauskas; Klaus Suhling; Marina K Kuimova; Ramon Vilar
Journal:  Nat Commun       Date:  2015-09-09       Impact factor: 14.919

9.  Differential responses of neurons, astrocytes, and microglia to G-quadruplex stabilization.

Authors:  Natalie Tabor; Conelius Ngwa; Jeremie Mitteaux; Matthew D Meyer; Jose F Moruno-Manchon; Liang Zhu; Fudong Liu; David Monchaud; Louise D McCullough; Andrey S Tsvetkov
Journal:  Aging (Albany NY)       Date:  2021-06-19       Impact factor: 5.682

10.  Small-molecule G-quadruplex stabilizers reveal a novel pathway of autophagy regulation in neurons.

Authors:  Jose F Moruno-Manchon; Pauline Lejault; Yaoxuan Wang; Brenna McCauley; Pedram Honarpisheh; Diego A Morales Scheihing; Shivani Singh; Weiwei Dang; Nayun Kim; Akihiko Urayama; Liang Zhu; David Monchaud; Louise D McCullough; Andrey S Tsvetkov
Journal:  Elife       Date:  2020-02-11       Impact factor: 8.713

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