Literature DB >> 26052171

Generalized adaptive intelligent binning of multiway data.

Bradley Worley1, Robert Powers1.   

Abstract

NMR metabolic fingerprinting methods almost exclusively rely upon the use of one-dimensional (1D) 1H NMR data to gain insights into chemical differences between two or more experimental classes. While 1D 1H NMR spectroscopy is a powerful, highly informative technique that can rapidly and nondestructively report details of complex metabolite mixtures, it suffers from significant signal overlap that hinders interpretation and quantification of individual analytes. Two-dimensional (2D) NMR methods that report heteronuclear connectivities can reduce spectral overlap, but their use in metabolic fingerprinting studies is limited. We describe a generalization of Adaptive Intelligent binning that enables its use on multidimensional datasets, allowing the direct use of nD NMR spectroscopic data in bilinear factorizations such as principal component analysis (PCA) and partial least squares (PLS).

Entities:  

Keywords:  Generalized AI-binning; Metabolomics; Multivariate statistics; Multiway data; NMR; Spectral alignment

Year:  2015        PMID: 26052171      PMCID: PMC4456038          DOI: 10.1016/j.chemolab.2015.05.005

Source DB:  PubMed          Journal:  Chemometr Intell Lab Syst        ISSN: 0169-7439            Impact factor:   3.491


  14 in total

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3.  Comparison of 1D and 2D NMR spectroscopy for metabolic profiling.

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Journal:  Anal Chem       Date:  2010-03-15       Impact factor: 6.986

6.  Identification and quantification of metabolites in (1)H NMR spectra by Bayesian model selection.

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Journal:  Bioinformatics       Date:  2011-03-12       Impact factor: 6.937

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8.  Multivariate Analysis in Metabolomics.

Authors:  Bradley Worley; Robert Powers
Journal:  Curr Metabolomics       Date:  2013

9.  Centering, scaling, and transformations: improving the biological information content of metabolomics data.

Authors:  Robert A van den Berg; Huub C J Hoefsloot; Johan A Westerhuis; Age K Smilde; Mariët J van der Werf
Journal:  BMC Genomics       Date:  2006-06-08       Impact factor: 3.969

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Journal:  ACS Chem Biol       Date:  2014-03-07       Impact factor: 5.100

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  7 in total

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2.  Assessment of Metabolic Changes in Mycobacterium smegmatis Wild-Type and alr Mutant Strains: Evidence of a New Pathway of d-Alanine Biosynthesis.

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3.  Combination of two analytical techniques improves wine classification by Vineyard, Region, and vintage.

Authors:  Alexandra A Crook; Diana Zamora-Olivares; Fatema Bhinderwala; Jade Woods; Michelle Winkler; Sebastian Rivera; Cassandra E Shannon; Holden R Wagner; Deborah L Zhuang; Jessica E Lynch; Nathan R Berryhill; Ron C Runnebaum; Eric V Anslyn; Robert Powers
Journal:  Food Chem       Date:  2021-03-10       Impact factor: 7.514

4.  Metabolic Mitigation of Staphylococcus aureus Vancomycin Intermediate-Level Susceptibility.

Authors:  Stewart G Gardner; Darrell D Marshall; Robert S Daum; Robert Powers; Greg A Somerville
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5.  Deep Learning-Based Method for Compound Identification in NMR Spectra of Mixtures.

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7.  DNAJA1 Dysregulates Metabolism Promoting an Antiapoptotic Phenotype in Pancreatic Ductal Adenocarcinoma.

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  7 in total

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