Literature DB >> 2605212

Fluorescence and 13C NMR determination of side-chain and backbone dynamics of synthetic melittin and melittin analogues in isotropic solvents.

A J Weaver1, M D Kemple, F G Prendergast.   

Abstract

The dynamics in isotopic solvents of selectively 13C labeled synthetic melittin and three analogues have been investigated by using NMR and fluorescence techniques both separately and in combination. In conjunction with the "model-free" approach to interpretation of NMR relaxation data [Lipari, G., & Szabo, A. (1982) J. Am. Chem. Soc. 104, 4546-4570], the availability of steady-state fluorescence anisotropy and lifetime data augment T1, T2, and NOE data to provide quantitative information about fluorophore dynamics in these peptides. A method is presented for using combined fluorescence and NMR data to obtain technique- and model-independent values for parameters describing local motion of 13C-labeled fluorophores in peptides and proteins. The dynamics of melittin and melittin analogues are found to be consistent with structural characteristics inferred from CD, fluorescence, and NMR spectral information presented in the preceding paper (Weaver et al., 1989). In particular, the mobility of the random coil peptide monomers is shown to be quite similar, while side-chain as well as peptide backbone motion in the aggregated or oligomeric species differs markedly among the analogues. For melittin itself, experimentally determined overall rotational correlation times for the monomer and tetramer agree very well with values predicted on the basis of solvent-accessible protein surface area. The local dynamics of selectively 13C-labeled Trp-19 and Gly-12 residues of melittin are also found to be consistent with peptide structure. In random coil melittin monomer, a specific model for the motion indicates that the Trp side chain moves through an approximate angle of +/- 71 degrees about the beta-gamma bond with a correlation time of 159 +/- 24 ps. In melittin tetramer, the indole moiety is spatially more confined with a flip angle of +/- 37 degrees, yet demonstrates an increased rate of motion with a correlation time of 56 +/- 8 ps. The constrained mobility of the Trp-19 side chain is consistent with motional constraints inferred from the X-ray structure of melittin tetramer. These results show that protein side-chain motion, even of moieties as large as indole, can occur on the picosecond time scale and that these motions are reasonably similar to those inferred from molecular dynamics simulations.

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Year:  1989        PMID: 2605212     DOI: 10.1021/bi00447a053

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  6 in total

1.  Backbone and side-chain dynamics of residues in a partially folded beta-sheet peptide from platelet factor-4.

Authors:  V A Daragan; E E Ilyina; C G Fields; G B Fields; K H Mayo
Journal:  Protein Sci       Date:  1997-02       Impact factor: 6.725

2.  Rapid amide proton exchange rates in peptides and proteins measured by solvent quenching and two-dimensional NMR.

Authors:  Y Z Zhang; Y Paterson; H Roder
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

3.  Molecular mechanics analysis of Tet repressor TRP-43 fluorescence.

Authors:  P Silvi Antonini; W Hillen; N Ettner; W Hinrichs; P Fantucci; S M Doglia; J A Bousquet; M Chabbert
Journal:  Biophys J       Date:  1997-04       Impact factor: 4.033

4.  Comparison of 15N- and 13C-determined parameters of mobility in melittin.

Authors:  L Zhu; F G Prendergast; M D Kemple
Journal:  J Biomol NMR       Date:  1998-07       Impact factor: 2.835

5.  Lysine side-chain dynamics derived from 13C-multiplet NMR relaxation studies on di- and tripeptides.

Authors:  D Mikhailov; V A Daragan; K H Mayo
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

6.  13C NMR and fluorescence analysis of tryptophan dynamics in wild-type and two single-Trp variants of Escherichia coli thioredoxin.

Authors:  M D Kemple; P Yuan; K E Nollet; J A Fuchs; N Silva; F G Prendergast
Journal:  Biophys J       Date:  1994-06       Impact factor: 4.033

  6 in total

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