Literature DB >> 26051357

High APOBEC3B expression is a predictor of recurrence in patients with low-risk clear cell renal cell carcinoma.

Le Xu1, Yuan Chang1, Huimin An1, Yu Zhu2, Yuanfeng Yang1, Jiejie Xu3.   

Abstract

PURPOSE: APOBEC3B is a member of the cytosine deaminase family, which converts cytosine to uracil during RNA editing and retrovirus or retrotransposon restriction. Recent evidence has revealed that APOBEC3B-catalyzed genomic DNA deamination could provide genetic fuel for cancer development, metastasis, and even treatment resistance. The aim of this study was to assess the association between APOBEC3B expression and the risk of recurrence after surgery in patients with renal cell carcinoma (RCC).
METHODS: We retrospectively enrolled 299 consecutive patients with RCC who underwent nephrectomy at a single center in 2008. Clinicopathologic variables and recurrence-free survival (RFS) were recorded. APOBEC3B expression levels were determined by immunohistochemistry in tumor tissues. Kaplan-Meier method was applied to compare survival curves. Cox regression models were fitted to analyze the effect of prognostic factors on RFS. The Harrell concordance index was calculated to assess predictive accuracy.
RESULTS: High APOBEC3B expression was associated with an increased risk of recurrence in patients with clear cell RCC (ccRCC) (P<0.001) rather than in patients with non-ccRCC (P = 0.247). After backward elimination, APOBEC3B expression was identified as an independent prognostic factor for RFS in patients with clear cell histology (P = 0.016). The predictive accuracy of the Leibovich prognostic score was improved when APOBEC3B expression was incorporated. Notably, the improvement in prediction mainly took place in patients with low-risk disease defined by the Leibovich score.
CONCLUSIONS: High APOBEC3B expression is an independent predictor of recurrence in patients with ccRCC, and the prognostic value is most prominent in those with low-risk disease.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  APOBEC3B; Prognostic biomarker; Recurrence-free survival; Renal cell carcinoma

Mesh:

Substances:

Year:  2015        PMID: 26051357     DOI: 10.1016/j.urolonc.2015.05.009

Source DB:  PubMed          Journal:  Urol Oncol        ISSN: 1078-1439            Impact factor:   3.498


  19 in total

1.  The deaminase APOBEC3B triggers the death of cells lacking uracil DNA glycosylase.

Authors:  Artur A Serebrenik; Gabriel J Starrett; Sterre Leenen; Matthew C Jarvis; Nadine M Shaban; Daniel J Salamango; Hilde Nilsen; William L Brown; Reuben S Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-14       Impact factor: 11.205

2.  Determinants of Oligonucleotide Selectivity of APOBEC3B.

Authors:  Jeffrey R Wagner; Özlem Demir; Michael A Carpenter; Hideki Aihara; Daniel A Harki; Reuben S Harris; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2018-09-10       Impact factor: 4.956

3.  The DNA Cytosine Deaminase APOBEC3B is a Molecular Determinant of Platinum Responsiveness in Clear Cell Ovarian Cancer.

Authors:  Artur A Serebrenik; Prokopios P Argyris; Matthew C Jarvis; William L Brown; Martina Bazzaro; Rachel I Vogel; Britt K Erickson; Sun-Hee Lee; Krista M Goergen; Matthew J Maurer; Ethan P Heinzen; Ann L Oberg; Yajue Huang; Xiaonan Hou; S John Weroha; Scott H Kaufmann; Reuben S Harris
Journal:  Clin Cancer Res       Date:  2020-02-14       Impact factor: 12.531

4.  Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain.

Authors:  Ke Shi; Michael A Carpenter; Kayo Kurahashi; Reuben S Harris; Hideki Aihara
Journal:  J Biol Chem       Date:  2015-09-28       Impact factor: 5.157

5.  APOBEC3B is an enzymatic source of molecular alterations in esophageal squamous cell carcinoma.

Authors:  Keisuke Kosumi; Yoshifumi Baba; Takatsugu Ishimoto; Kazuto Harada; Kenichi Nakamura; Mayuko Ohuchi; Yuki Kiyozumi; Daisuke Izumi; Ryuma Tokunaga; Katsunobu Taki; Takaaki Higashi; Tatsunori Miyata; Hironobu Shigaki; Junji Kurashige; Yukiharu Hiyoshi; Masaaki Iwatsuki; Shiro Iwagami; Yasuo Sakamoto; Yuji Miyamoto; Naoya Yoshida; Eiji Oki; Masayuki Watanabe; Hideo Baba
Journal:  Med Oncol       Date:  2016-02-15       Impact factor: 3.064

Review 6.  Molecular origins of APOBEC-associated mutations in cancer.

Authors:  Mia Petljak; John Maciejowski
Journal:  DNA Repair (Amst)       Date:  2020-07-06

7.  Prognostic Impact of APOBEC3B Expression in Metastatic Urothelial Carcinoma and Its Association with Tumor-Infiltrating Cytotoxic T Cells.

Authors:  Hyunho Kim; Okran Kim; Myung Ah Lee; Ji Youl Lee; Sung-Hoo Hong; U-Syn Ha; Kwangil Yim; In-Ho Kim
Journal:  Curr Oncol       Date:  2021-04-28       Impact factor: 3.677

8.  Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B.

Authors:  Ke Shi; Özlem Demir; Michael A Carpenter; Jeff Wagner; Kayo Kurahashi; Reuben S Harris; Rommie E Amaro; Hideki Aihara
Journal:  Sci Rep       Date:  2017-12-12       Impact factor: 4.379

9.  APOBEC3G Expression Correlates with T-Cell Infiltration and Improved Clinical Outcomes in High-grade Serous Ovarian Carcinoma.

Authors:  Brandon Leonard; Gabriel J Starrett; Matthew J Maurer; Ann L Oberg; Mieke Van Bockstal; Jo Van Dorpe; Olivier De Wever; Jozien Helleman; Anieta M Sieuwerts; Els M J J Berns; John W M Martens; Brett D Anderson; William L Brown; Kimberly R Kalli; Scott H Kaufmann; Reuben S Harris
Journal:  Clin Cancer Res       Date:  2016-03-25       Impact factor: 12.531

10.  The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis.

Authors:  Gabriel J Starrett; Elizabeth M Luengas; Jennifer L McCann; Diako Ebrahimi; Nuri A Temiz; Robin P Love; Yuqing Feng; Madison B Adolph; Linda Chelico; Emily K Law; Michael A Carpenter; Reuben S Harris
Journal:  Nat Commun       Date:  2016-09-21       Impact factor: 14.919

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