Literature DB >> 26048776

Helix mimetics: Recent developments.

Andrew J Wilson1.   

Abstract

The development of protein-protein interaction (PPIs) inhibitors represents a challenging goal in chemical biology and drug discovery. PPIs are problematic targets because they involve large surfaces with less well defined features and recognition motifs that are less amenable to conventional experimental and computational ligand discovery methodologies. α-Helix mediated PPIs represent a sub group with a clearly defined interface and thus may be more amenable to the development of generic ligand discovery methods. Indeed, this is borne out in numerous studies using peptides covalently constrained into a helical conformation resulting in improvement of myriad biophysical and cellular properties. It is however desirable to have small molecule alternatives: a helix mimetic (proteomimetic) is a generic small molecule scaffold that projects functional groups in a similar spatial orientation so as to mimic the presentation of key amino acid side chains from the helix that mediates the PPI. The first true example of a helix mimetic was described over a decade ago however this approach has not yet been elaborated to the extent that it receives similar levels of attention to constrained peptides. This review explores recent significant developments in the area of small molecule α-helix mimetics and provides a critical overview of success stories, potential limitations of the approach, and areas for future development.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Keywords:  Chemical biology; Inhibitors; Protein–protein interactions; α-Helix; α-Helix mimetic

Mesh:

Year:  2015        PMID: 26048776     DOI: 10.1016/j.pbiomolbio.2015.05.001

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  10 in total

1.  3-2-1: Structural insights from stepwise shrinkage of a three-helix Fc-binding domain to a single helix.

Authors:  M Ultsch; A Braisted; H R Maun; C Eigenbrot
Journal:  Protein Eng Des Sel       Date:  2017-09-01       Impact factor: 1.650

Review 2.  Engineered protein scaffolds as leads for synthetic inhibitors of protein-protein interactions.

Authors:  Michael G Wuo; Paramjit S Arora
Journal:  Curr Opin Chem Biol       Date:  2018-05-24       Impact factor: 8.822

3.  Carboxylate-functionalized foldamer inhibitors of HIV-1 integrase and Topoisomerase 1: artificial analogues of DNA mimic proteins.

Authors:  Valentina Corvaglia; Daniel Carbajo; Panchami Prabhakaran; Krzysztof Ziach; Pradeep Kumar Mandal; Victor Dos Santos; Carole Legeay; Rachel Vogel; Vincent Parissi; Philippe Pourquier; Ivan Huc
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

4.  Targeting the Side-Chain Convergence of Hydrophobic α-Helical Hot Spots To Design Small-Molecule Mimetics: Key Binding Features for i, i + 3, and i + 7.

Authors:  Zhen Wang; Haitao Ji
Journal:  J Med Chem       Date:  2019-10-22       Impact factor: 7.446

5.  Common Structural Features of Hydrophobic α-Helical Hot Spots: Insights for the Design of Novel α-Helix Mimetics.

Authors:  Shelby R Kell; Zhen Wang; Haitao Ji
Journal:  ACS Med Chem Lett       Date:  2022-09-14       Impact factor: 4.632

6.  Blocking the RecA activity and SOS-response in bacteria with a short α-helical peptide.

Authors:  Alexander Yakimov; Georgii Pobegalov; Irina Bakhlanova; Mikhail Khodorkovskii; Michael Petukhov; Dmitry Baitin
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

Review 7.  Small Molecule Targeting of Protein-Protein Interactions through Allosteric Modulation of Dynamics.

Authors:  Benjamin P Cossins; Alastair D G Lawson
Journal:  Molecules       Date:  2015-09-10       Impact factor: 4.411

8.  Nucleic acid recognition and antiviral activity of 1,4-substituted terphenyl compounds mimicking all faces of the HIV-1 Rev protein positively-charged α-helix.

Authors:  Cristina Medina-Trillo; Daniel M Sedgwick; Lidia Herrera; Manuela Beltrán; Ángela Moreno; Pablo Barrio; Luis M Bedoya; José Alcamí; Santos Fustero; José Gallego
Journal:  Sci Rep       Date:  2020-04-28       Impact factor: 4.379

Review 9.  Heterocycles as a Peptidomimetic Scaffold: Solid-Phase Synthesis Strategies.

Authors:  Aizhan Abdildinova; Mark J Kurth; Young-Dae Gong
Journal:  Pharmaceuticals (Basel)       Date:  2021-05-10

10.  Towards "bionic" proteins: replacement of continuous sequences from HIF-1α with proteomimetics to create functional p300 binding HIF-1α mimics.

Authors:  George M Burslem; Hannah F Kyle; Alexander L Breeze; Thomas A Edwards; Adam Nelson; Stuart L Warriner; Andrew J Wilson
Journal:  Chem Commun (Camb)       Date:  2016-04-07       Impact factor: 6.222

  10 in total

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