Literature DB >> 26045794

Identification of functional tag single nucleotide polmorphisms within the entire CAT gene and their clinical relevance in patients with noise-induced hearing loss.

Junhui Yang1, Jieyuan Zhang2, Xiaoming Wang3, Chaoyong Wang4, Jichuan Chen1, Yu Qian1, Zhaoxia Duan2.   

Abstract

OBJECTIVES: Noise-induced hearing loss (NIHL) is an important occupational disease which results from an interaction between genetic and environmental factors. More and more evidences suggested that Catalase (CAT) gene polymorphism plays an important role in the development of NIHL. The aim of this study was to investigate the association of CAT gene polymorphisms with NIHL in a case-control study.
DESIGN: A total of 719 unrelated adult Chinese Han population, including 225 healthy volunteers and 494 noise-exposed workers were recruited in this study. Six tag single-nucleotide polymorphisms (tSNPs) were genotyped using an improved multiplex ligation detection reaction technique. Subsequently, the interaction between noise exposure level and genotypes and their effect on NIHL were analyzed using logistic regression.
RESULTS: Among six tSNPs, two of them (rs208679 and rs769217) were significantly associated with noise exposure level. For rs208679 recessive effect, GG genotype had a significantly increased of NIHL risk in the exposure level of <85 dB; and for rs769217 dominant effect, the combined genotypes TT/TC had a significantly increased of NIHL risk in the exposure level of 85 dB~92 dB; and the haplotype A-G-T-C-A-C had a risk effect on the NIHL in the exposure level of 85 dB~92 dB. In addition, the rs769217 polymorphism could enhance the transcription activities of the CAT gene.
CONCLUSIONS: This study identified CAT is a NIHL susceptibility gene when noise exposure levels are taken into account. Rs208679 and rs769217 polymorphisms might be used as relevant risk estimates for the development of NIHL in population with different noise exposure levels.

Entities:  

Keywords:  Noise-induced hearing loss; catalase; clinical relevance; single-nucleotide polymorphism; tag

Mesh:

Substances:

Year:  2015        PMID: 26045794      PMCID: PMC4440103     

Source DB:  PubMed          Journal:  Int J Clin Exp Pathol        ISSN: 1936-2625


  24 in total

1.  The structure of haplotype blocks in the human genome.

Authors:  Stacey B Gabriel; Stephen F Schaffner; Huy Nguyen; Jamie M Moore; Jessica Roy; Brendan Blumenstiel; John Higgins; Matthew DeFelice; Amy Lochner; Maura Faggart; Shau Neen Liu-Cordero; Charles Rotimi; Adebowale Adeyemo; Richard Cooper; Ryk Ward; Eric S Lander; Mark J Daly; David Altshuler
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

Review 2.  Promotion of noise-induced hearing loss by chemical contaminants.

Authors:  Laurence D Fechter
Journal:  J Toxicol Environ Health A       Date:  2004 Apr 23-May 28

3.  Haploview: analysis and visualization of LD and haplotype maps.

Authors:  J C Barrett; B Fry; J Maller; M J Daly
Journal:  Bioinformatics       Date:  2004-08-05       Impact factor: 6.937

Review 4.  Noise induced hearing loss: research in Central, Eastern and South-Eastern Europe and Newly Independent States.

Authors:  Malgorzata Pawlaczyk-Luszczynska; Adam Dudarewicz; Kamil Zaborowski; Malgorzata Zamojska; Mariola Sliwinska-Kowalska
Journal:  Noise Health       Date:  2013 Jan-Feb       Impact factor: 0.867

5.  Interaction between single nucleotide polymorphism in catalase gene and catalase activity under the conditions of oxidative stress.

Authors:  A V Komina; K A Korostileva; S N Gyrylova; R N Belonogov; T G Ruksha
Journal:  Physiol Res       Date:  2012-10-25       Impact factor: 1.881

6.  Noise-induced hearing loss (NIHL) as a target of oxidative stress-mediated damage: cochlear and cortical responses after an increase in antioxidant defense.

Authors:  Anna Rita Fetoni; Paola De Bartolo; Sara Letizia Maria Eramo; Rolando Rolesi; Fabiola Paciello; Christian Bergamini; Romana Fato; Gaetano Paludetti; Laura Petrosini; Diana Troiani
Journal:  J Neurosci       Date:  2013-02-27       Impact factor: 6.167

7.  The effect of D-methionine on cochlear oxidative state with and without cisplatin administration: mechanisms of otoprotection.

Authors:  Kathleen C M Campbell; Robert P Meech; Leonard P Rybak; Larry F Hughes
Journal:  J Am Acad Audiol       Date:  2003-04       Impact factor: 1.664

8.  Lack of association between DNMT1 gene polymorphisms and noise-induced hearing loss in a Chinese population.

Authors:  Feifei Hu; Xin Li; Xiuting Li; Meilin Wang; Haiyan Chu; Kai Liu; Hengdong Zhang; Zhengdong Zhang; Baoli Zhu
Journal:  Noise Health       Date:  2013 Jul-Aug       Impact factor: 0.867

9.  JLIN: a java based linkage disequilibrium plotter.

Authors:  Kim W Carter; Pamela A McCaskie; Lyle J Palmer
Journal:  BMC Bioinformatics       Date:  2006-02-09       Impact factor: 3.169

10.  A catalase promoter variant rs1001179 is associated with visual acuity but not with primary angle closure glaucoma in Saudi patients.

Authors:  Khaled K Abu-Amero; Taif Anwar Azad; Ahmed Mousa; Essam A Osman; Tahira Sultan; Saleh A Al-Obeidan
Journal:  BMC Med Genet       Date:  2013-08-20       Impact factor: 2.103

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  3 in total

Review 1.  An overview of research trends and genetic polymorphisms for noise-induced hearing loss from 2009 to 2018.

Authors:  Long Miao; Jiahui Ji; Liu Wan; Juan Zhang; Lihong Yin; Yuepu Pu
Journal:  Environ Sci Pollut Res Int       Date:  2019-11-06       Impact factor: 4.223

2.  Role of CASP7 polymorphisms in noise-induced hearing loss risk in Han Chinese population.

Authors:  Yanmei Ruan; Jinwei Zhang; Shiqi Mai; Wenfeng Zeng; Lili Huang; Chunrong Gu; Keping Liu; Yuying Ma; Zhi Wang
Journal:  Sci Rep       Date:  2021-01-19       Impact factor: 4.379

Review 3.  The Role of Genetic Variants in the Susceptibility of Noise-Induced Hearing Loss.

Authors:  Xue-Min Chen; Xin-Miao Xue; Ning Yu; Wei-Wei Guo; Shuo-Long Yuan; Qing-Qing Jiang; Shi-Ming Yang
Journal:  Front Cell Neurosci       Date:  2022-07-12       Impact factor: 6.147

  3 in total

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