Literature DB >> 26045164

Functional annotation of cis-regulatory elements in human cells by dCas9/sgRNA.

Yinan Du1, Qingzhou Meng2, Jun Zhang2, Man Sun2, Bin Shen3, Hui Jiang2, Nannan Kang4, Jimin Gao4, Xingxu Huang1, Jianghuai Liu2.   

Abstract

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Year:  2015        PMID： 26045164      PMCID： PMC4493279          DOI： 10.1038/cr.2015.70

Source DB:  PubMed          Journal:  Cell Res        ISSN： 1001-0602            Impact factor:   25.617


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  11 in total

Review 1.  Type I interferon [corrected] gene induction by the interferon regulatory factor family of transcription factors.

Authors:  Kenya Honda; Akinori Takaoka; Tadatsugu Taniguchi
Journal:  Immunity       Date:  2006-09       Impact factor: 31.745

2.  Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells.

Authors:  Xuebing Wu; David A Scott; Andrea J Kriz; Anthony C Chiu; Patrick D Hsu; Daniel B Dadon; Albert W Cheng; Alexandro E Trevino; Silvana Konermann; Sidi Chen; Rudolf Jaenisch; Feng Zhang; Phillip A Sharp
Journal:  Nat Biotechnol       Date:  2014-04-20       Impact factor: 54.908

3.  Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease.

Authors:  Cem Kuscu; Sevki Arslan; Ritambhara Singh; Jeremy Thorpe; Mazhar Adli
Journal:  Nat Biotechnol       Date:  2014-05-18       Impact factor: 54.908

Review 4.  Development and applications of CRISPR-Cas9 for genome engineering.

Authors:  Patrick D Hsu; Eric S Lander; Feng Zhang
Journal:  Cell       Date:  2014-06-05       Impact factor: 41.582

5.  Selective STAT protein degradation induced by paramyxoviruses requires both STAT1 and STAT2 but is independent of alpha/beta interferon signal transduction.

Authors:  Jean-Patrick Parisien; Joe F Lau; Jason J Rodriguez; Christina M Ulane; Curt M Horvath
Journal:  J Virol       Date:  2002-05       Impact factor: 5.103

6.  Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.

Authors:  Lei S Qi; Matthew H Larson; Luke A Gilbert; Jennifer A Doudna; Jonathan S Weissman; Adam P Arkin; Wendell A Lim
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

7.  p48/STAT-1alpha-containing complexes play a predominant role in induction of IFN-gamma-inducible protein, 10 kDa (IP-10) by IFN-gamma alone or in synergy with TNF-alpha.

Authors:  S Majumder; L Z Zhou; P Chaturvedi; G Babcock; S Aras; R M Ransohoff
Journal:  J Immunol       Date:  1998-11-01       Impact factor: 5.422

8.  CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes.

Authors:  Luke A Gilbert; Matthew H Larson; Leonardo Morsut; Zairan Liu; Gloria A Brar; Sandra E Torres; Noam Stern-Ginossar; Onn Brandman; Evan H Whitehead; Jennifer A Doudna; Wendell A Lim; Jonathan S Weissman; Lei S Qi
Journal:  Cell       Date:  2013-07-11       Impact factor: 41.582

9.  Structures of Cas9 endonucleases reveal RNA-mediated conformational activation.

Authors:  Martin Jinek; Fuguo Jiang; David W Taylor; Samuel H Sternberg; Emine Kaya; Enbo Ma; Carolin Anders; Michael Hauer; Kaihong Zhou; Steven Lin; Matias Kaplan; Anthony T Iavarone; Emmanuelle Charpentier; Eva Nogales; Jennifer A Doudna
Journal:  Science       Date:  2014-02-06       Impact factor: 47.728

10.  An integrated encyclopedia of DNA elements in the human genome.

Authors: 
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962
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  3 in total

1.  Identification of a Distal Locus Enhancer Element That Controls Cell Type-Specific TNF and LTA Gene Expression in Human T Cells.

Authors:  Luke D Jasenosky; Aya Nambu; Alla V Tsytsykova; Shahin Ranjbar; Viraga Haridas; Laurens Kruidenier; David F Tough; Anne E Goldfeld
Journal:  J Immunol       Date:  2020-09-25       Impact factor: 5.422

2.  A Convenient Cas9-based Conditional Knockout Strategy for Simultaneously Targeting Multiple Genes in Mouse.

Authors:  Jiang Chen; Yinan Du; Xueyan He; Xingxu Huang; Yun S Shi
Journal:  Sci Rep       Date:  2017-03-31       Impact factor: 4.379

3.  Precise tumor immune rewiring via synthetic CRISPRa circuits gated by concurrent gain/loss of transcription factors.

Authors:  Yafeng Wang; Guiquan Zhang; Qingzhou Meng; Shisheng Huang; Panpan Guo; Qibin Leng; Lingyun Sun; Geng Liu; Xingxu Huang; Jianghuai Liu
Journal:  Nat Commun       Date:  2022-03-18       Impact factor: 14.919
  3 in total

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