Literature DB >> 26044554

Prediction of drug-induced eosinophilia adverse effect by using SVM and naïve Bayesian approaches.

Hui Zhang1,2, Peng Yu3, Ming-Li Xiang4, Xi-Bo Li3, Wei-Bao Kong3, Jun-Yi Ma3, Jun-Long Wang3, Jin-Ping Zhang3, Ji Zhang3,5.   

Abstract

Drug-induced eosinophilia is a potentially life-threatening adverse effect; clinical manifestations, eosinophilia-myalgia syndrome, mainly include severe skin eruption, fever, hematologic abnormalities, and organ system dysfunction. Using experimental methods to evaluate drug-induced eosinophilia is very complicated, time-consuming, and costly in the early stage of drug development. Thus, in this investigation, we established computational prediction models of drug-induced eosinophilia using SVM and naïve Bayesian approaches. For the SVM modeling, the overall prediction accuracy for the training set by means of fivefold cross-validation is 91.6 and for the external test set is 82.9 %. For the naïve Bayesian modeling, the overall prediction accuracy for the training set is 92.5 and for the external test set is 85.4 %. Moreover, some molecular descriptors and substructures considered as important for drug-induced eosinophilia were identified. Thus, we hope the prediction models of drug-induced eosinophilia built in this work should be applied to filter early-stage molecules for potential eosinophilia adverse effect, and the selected molecular descriptors and substructures of toxic compounds should be taken into consideration in the design of new candidate drugs to help medicinal chemists rationally select the chemicals with the best prospects to be effective and safe.

Entities:  

Keywords:  Drug-induced eosinophilia; Important features; Naïve Bayesian; Prediction; Support vector machine

Mesh:

Substances:

Year:  2015        PMID: 26044554     DOI: 10.1007/s11517-015-1321-8

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  23 in total

Review 1.  The immunobiology of eosinophils.

Authors:  P F Weller
Journal:  N Engl J Med       Date:  1991-04-18       Impact factor: 91.245

Review 2.  Molecular classification and pathogenesis of eosinophilic disorders: 2005 update.

Authors:  Jason Gotlib
Journal:  Acta Haematol       Date:  2005       Impact factor: 2.195

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Review 4.  Eosinophilia myalgia syndrome.

Authors:  W D Blackburn
Journal:  Semin Arthritis Rheum       Date:  1997-06       Impact factor: 5.532

Review 5.  The role of eosinophils and eosinophil cationic protein in oral cancer: a review.

Authors:  Michele Conceição Pereira; Denise Tostes Oliveira; Luiz Paulo Kowalski
Journal:  Arch Oral Biol       Date:  2010-11-26       Impact factor: 2.633

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Journal:  Eur J Pharmacol       Date:  2013-06-06       Impact factor: 4.432

7.  3D QSAR Markov model for drug-induced eosinophilia--theoretical prediction and preliminary experimental assay of the antimicrobial drug G1.

Authors:  Humberto González-Díaz; Esvieta Tenorio; Nilo Castañedo; Lourdes Santana; Eugenio Uriarte
Journal:  Bioorg Med Chem       Date:  2005-03-01       Impact factor: 3.641

8.  Studies with 1,1'-ethylidenebis(tryptophan), a contaminant associated with L-tryptophan implicated in the eosinophilia-myalgia syndrome.

Authors:  H Sidransky; E Verney; J W Cosgrove; P S Latham; A N Mayeno
Journal:  Toxicol Appl Pharmacol       Date:  1994-05       Impact factor: 4.219

9.  In silico prediction of mitochondrial toxicity by using GA-CG-SVM approach.

Authors:  Hui Zhang; Qing-Yi Chen; Ming-Li Xiang; Chang-Ying Ma; Qi Huang; Sheng-Yong Yang
Journal:  Toxicol In Vitro       Date:  2008-10-02       Impact factor: 3.500

10.  Compartmental model identification based on an empirical Bayesian approach: the case of thiamine kinetics in rats.

Authors:  P Magni; R Bellazzi; A Nauti; C Patrini; G Rindi
Journal:  Med Biol Eng Comput       Date:  2001-11       Impact factor: 3.079

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