Literature DB >> 26037134

A (15)N CPMG relaxation dispersion experiment more resistant to resonance offset and pulse imperfection.

Bin Jiang1, Binhan Yu2, Xu Zhang3, Maili Liu4, Daiwen Yang5.   

Abstract

Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion is a powerful NMR method to study protein dynamics on the microsecond-millisecond time scale. J-coupling, resonance offset, radio frequency field inhomogeneity, and pulse imperfection often introduce systematic errors into the measured transverse relaxation rates. Here we proposed a modified continuous wave decoupling CPMG experiment, which is more unaffected by resonance offset and pulse imperfection. We found that it is unnecessary to match the decoupling field strength with the delay between CPMG refocusing pulses, provided that decoupling field is strong enough. The performance of the scheme proposed here was shown by simulations and further demonstrated experimentally on a fatty acid binding protein.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CPMG; Conformational exchange; Protein dynamics; Relaxation dispersion

Mesh:

Substances:

Year:  2015        PMID: 26037134     DOI: 10.1016/j.jmr.2015.05.003

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  14 in total

1.  The Role of Protein Thermodynamics and Primary Structure in Fibrillogenesis of Variable Domains from Immunoglobulin Light Chains.

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2.  An NMR strategy to detect conformational differences in a protein complexed with highly analogous inhibitors in solution.

Authors:  John D Persons; Shahid N Khan; Rieko Ishima
Journal:  Methods       Date:  2018-04-12       Impact factor: 3.608

3.  Ligand Entry into Fatty Acid Binding Protein via Local Unfolding Instead of Gap Widening.

Authors:  Tianshu Xiao; Yimei Lu; Jing-Song Fan; Daiwen Yang
Journal:  Biophys J       Date:  2019-12-14       Impact factor: 4.033

4.  A New Method for Determining Structure Ensemble: Application to a RNA Binding Di-Domain Protein.

Authors:  Wei Liu; Jingfeng Zhang; Jing-Song Fan; Giancarlo Tria; Gerhard Grüber; Daiwen Yang
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

5.  Quantitative measurement of exchange dynamics in proteins via (13)C relaxation dispersion of (13)CHD2-labeled samples.

Authors:  Enrico Rennella; Anne K Schuetz; Lewis E Kay
Journal:  J Biomol NMR       Date:  2016-06-01       Impact factor: 2.835

6.  Simultaneous determination of fast and slow dynamics in molecules using extreme CPMG relaxation dispersion experiments.

Authors:  Jithender G Reddy; Supriya Pratihar; David Ban; Sebastian Frischkorn; Stefan Becker; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2017-11-29       Impact factor: 2.835

7.  Revisiting 1HN CPMG relaxation dispersion experiments: a simple modification can eliminate large artifacts.

Authors:  Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2019-10-23       Impact factor: 2.835

8.  Conformational exchange of fatty acid binding protein induced by protein-nanodisc interactions.

Authors:  Yimei Lu; Daiwen Yang
Journal:  Biophys J       Date:  2021-10-01       Impact factor: 4.033

9.  A methyl 1H double quantum CPMG experiment to study protein conformational exchange.

Authors:  Anusha B Gopalan; Tairan Yuwen; Lewis E Kay; Pramodh Vallurupalli
Journal:  J Biomol NMR       Date:  2018-10-01       Impact factor: 2.835

10.  Dengue virus protease activity modulated by dynamics of protease cofactor.

Authors:  Wen Hao Kenneth Lee; Wei Liu; Jing-Song Fan; Daiwen Yang
Journal:  Biophys J       Date:  2021-04-22       Impact factor: 3.699

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