Literature DB >> 26036564

A gyrovirus infecting a sea bird.

Linlin Li1, Patricia A Pesavento, Anne M Gaynor, Rebecca S Duerr, Tung Gia Phan, Wen Zhang, Xutao Deng, Eric Delwart.   

Abstract

We characterized the genome of a highly divergent gyrovirus (GyV8) in the spleen and uropygial gland tissues of a diseased northern fulmar (Fulmarus glacialis), a pelagic bird beached in San Francisco, California. No other exogenous viral sequences could be identified using viral metagenomics. The small circular DNA genome shared no significant nucleotide sequence identity, and only 38-42 % amino acid sequence identity in VP1, with any of the previously identified gyroviruses. GyV8 is the first member of the third major phylogenetic clade of this viral genus and the first gyrovirus detected in an avian species other than chicken.

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Year:  2015        PMID: 26036564      PMCID: PMC4657940          DOI: 10.1007/s00705-015-2468-1

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  37 in total

1.  A third gyrovirus species in human faeces.

Authors:  Tung G Phan; Linlin Li; Miguel G O'Ryan; Hector Cortes; Nora Mamani; Isidore J O Bonkoungou; Chunling Wang; Christian M Leutenegger; Eric Delwart
Journal:  J Gen Virol       Date:  2012-03-14       Impact factor: 3.891

2.  An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data.

Authors:  Xutao Deng; Samia N Naccache; Terry Ng; Scot Federman; Linlin Li; Charles Y Chiu; Eric L Delwart
Journal:  Nucleic Acids Res       Date:  2015-01-13       Impact factor: 16.971

3.  Discovery of a genome of a distant relative of chicken anemia virus reveals a new member of the genus Gyrovirus.

Authors:  Franciscus A M Rijsewijk; Helton F Dos Santos; Thais F Teixeira; Samuel P Cibulski; Ana P M Varela; Diogenes Dezen; Ana C Franco; Paulo M Roehe
Journal:  Arch Virol       Date:  2011-03-26       Impact factor: 2.574

Review 4.  Apoptosis-inducing proteins in chicken anemia virus and TT virus.

Authors:  M H de Smit; M H M Noteborn
Journal:  Curr Top Microbiol Immunol       Date:  2009       Impact factor: 4.291

5.  Characterization of cloned chicken anemia virus DNA that contains all elements for the infectious replication cycle.

Authors:  M H Noteborn; G F de Boer; D J van Roozelaar; C Karreman; O Kranenburg; J G Vos; S H Jeurissen; R C Hoeben; A Zantema; G Koch
Journal:  J Virol       Date:  1991-06       Impact factor: 5.103

6.  Human Gyrovirus Apoptin shows a similar subcellular distribution pattern and apoptosis induction as the chicken anaemia virus derived VP3/Apoptin.

Authors:  J Bullenkamp; D Cole; F Malik; H Alkhatabi; A Kulasekararaj; E W Odell; F Farzaneh; J Gäken; M Tavassoli
Journal:  Cell Death Dis       Date:  2012-04-12       Impact factor: 8.469

7.  Unexplained diarrhoea in HIV-1 infected individuals.

Authors:  Bas B Oude Munnink; Marta Canuti; Martin Deijs; Michel de Vries; Maarten F Jebbink; Sjoerd Rebers; Richard Molenkamp; Formijn J van Hemert; Kevin Chung; Matthew Cotten; Fransje Snijders; Cees J A Sol; Lia van der Hoek
Journal:  BMC Infect Dis       Date:  2014-01-13       Impact factor: 3.090

8.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

9.  Divergent astrovirus associated with neurologic disease in cattle.

Authors:  Linlin Li; Santiago Diab; Sabrina McGraw; Bradd Barr; Ryan Traslavina; Robert Higgins; Tom Talbot; Pat Blanchard; Guillermo Rimoldi; Elizabeth Fahsbender; Brady Page; Tung Gia Phan; Chunlin Wang; Xutao Deng; Patricia Pesavento; Eric Delwart
Journal:  Emerg Infect Dis       Date:  2013       Impact factor: 6.883

10.  What is for dinner? Viral metagenomics of US store bought beef, pork, and chicken.

Authors:  Wen Zhang; Linlin Li; Xutao Deng; Beatrix Kapusinszky; Eric Delwart
Journal:  Virology       Date:  2014-09-16       Impact factor: 3.616

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  8 in total

1.  Quebec: Avian pathogens identification and genomic characterization: 2021 annual review of the Molecular Diagnostic Laboratory, Université de Montréal.

Authors:  Carl A Gagnon; Véronique Bournival; Marika Koszegi; Nicolas Nantel-Fortier; Valérie Grenier St-Sauveur; Chantale Provost; Stéphane Lair
Journal:  Can Vet J       Date:  2022-05       Impact factor: 1.075

2.  A novel gyrovirus in a common pheasant (Phasianus colchicus) with poult enteritis and mortality syndrome.

Authors:  Enikő Fehér; Krisztina Bali; Eszter Kaszab; Katalin Ihász; Szilvia Jakab; Borbála Nagy; Krisztina Ursu; Szilvia L Farkas; Krisztián Bányai
Journal:  Arch Virol       Date:  2022-03-20       Impact factor: 2.685

3.  Detection of a novel circovirus PCV3 in pigs with cardiac and multi-systemic inflammation.

Authors:  Tung Gia Phan; Federico Giannitti; Stephanie Rossow; Douglas Marthaler; Todd P Knutson; Linlin Li; Xutao Deng; Talita Resende; Fabio Vannucci; Eric Delwart
Journal:  Virol J       Date:  2016-11-11       Impact factor: 4.099

4.  Genome Sequence of a Gyrovirus Associated with Ashy Storm-Petrel.

Authors:  Kara Waits; Russell W Bradley; Pete Warzybok; Simona Kraberger; Rafaela S Fontenele; Arvind Varsani
Journal:  Microbiol Resour Announc       Date:  2018-09-20

5.  Faecal Virome Analysis of Wild Animals from Brazil.

Authors:  Matheus A Duarte; João M F Silva; Clara R Brito; Danilo S Teixeira; Fernando L Melo; Bergmann M Ribeiro; Tatsuya Nagata; Fabrício S Campos
Journal:  Viruses       Date:  2019-08-30       Impact factor: 5.048

6.  Metagenomic characterisation of additional and novel avian viruses from Australian wild ducks.

Authors:  Jessy Vibin; Anthony Chamings; Marcel Klaassen; Soren Alexandersen
Journal:  Sci Rep       Date:  2020-12-17       Impact factor: 4.379

7.  Genomic Characterization of Diverse Gyroviruses Identified in the Feces of Domestic Cats.

Authors:  Jiang-Ting Niu; Shu-Shuai Yi; Guo-Ying Dong; Yan-Bing Guo; Yan-Li Zhao; Hai-Long Huang; Kai Wang; Gui-Xue Hu; Hao Dong
Journal:  Sci Rep       Date:  2019-09-16       Impact factor: 4.379

8.  A Novel and Divergent Gyrovirus with Unusual Genomic Features Detected in Wild Passerine Birds from a Remote Rainforest in French Guiana.

Authors:  Daniel A Truchado; José Manuel Diaz-Piqueras; Esperanza Gomez-Lucia; Ana Doménech; Borja Milá; Javier Pérez-Tris; Jonas Schmidt-Chanasit; Daniel Cadar; Laura Benítez
Journal:  Viruses       Date:  2019-12-11       Impact factor: 5.048

  8 in total

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