| Literature DB >> 26032201 |
Tomonari Sumi1, Ayori Mitsutake2,3, Yutaka Maruyama2.
Abstract
The three-dimensional reference interaction site model (3D-RISM) theory, which is one of the most applicable integral equation theories for molecular liquids, overestimates the absolute values of solvation-free-energy (SFE) for large solute molecules in water. To improve the free-energy density functional for the SFE of solute molecules, we propose a reference-modified density functional theory (RMDFT) that is a general theoretical approach to construct the free-energy density functional systematically. In the RMDFT formulation, hard-sphere (HS) fluids are introduced as the reference system instead of an ideal polyatomic molecular gas, which has been regarded as the appropriate reference system of the interaction-site-model density functional theory for polyatomic molecular fluids. We show that using RMDFT with a reference HS system can significantly improve the absolute values of the SFE for a set of neutral amino acid side-chain analogues as well as for 504 small organic molecules.Entities:
Keywords: 3D-RISM theory; amino acid side-chain; chignolin; classical density functional theory; salvation-free-energy; water
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Year: 2015 PMID: 26032201 DOI: 10.1002/jcc.23942
Source DB: PubMed Journal: J Comput Chem ISSN: 0192-8651 Impact factor: 3.376