Literature DB >> 26029445

Crystal structure of diethyl 3,3'-{2,2'-(1E)-[1,4-phenyl-enebis(azan-1-yl-1-yl-idene)]bis-(methan-1-yl-1-yl-idene)bis-(1H-pyrrole-2,1-di-yl)}di-propano-ate.

Jasim Alshawi1, Muoayed Yousif1, Gregore Timco2, Inigo J Vitorica Yrezabal2, Richard Winpenny2, Mohamad J Al-Jeboori3.   

Abstract

The complete mol-ecule of the title compound, C26H30N4O4, is generated by crystallographic inversion symmetry. The dihedral angle between the planes of the benzene and pyrrole rings is 45.20 (11)°; the N atom bonded to the the benzene ring and the pyrrole N atom are in a syn conformation. The side chain adopts an extended conformation [N-C-C-C = 169.07 (17)° and C-O-C-C = -176.54 (17)°]. No directional inter-actions could be identified in the crystal packing.

Entities:  

Keywords:  Schiff base; bis­(pyrrole ester); crystal structure

Year:  2015        PMID: 26029445      PMCID: PMC4438852          DOI: 10.1107/S2056989015005113

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis of di­pyrrole Schiff base ligands, see: Meghdadi et al.(2010 ▸); Munro et al. (2004 ▸). For the synthesis of pyrrole ester precursors, see: Koriatopoulou et al. (2008 ▸); Singh & Pal (2010 ▸). For the preparation of the title compound, see: Yang et al. (2004 ▸); Ourari et al. (2013 ▸).

Experimental

Crystal data

C26H30N4O4 M = 462.54 Monoclinic, a = 21.6153 (10) Å b = 8.1227 (4) Å c = 13.9404 (8) Å β = 94.395 (5)° V = 2440.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.4 × 0.3 × 0.3 mm

Data collection

Agilent SuperNova (Single source at offset, Atlas) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▸) T min = 0.613, T max = 1.000 6592 measured reflections 2900 independent reflections 1697 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.138 S = 1.10 2900 reflections 155 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.26 e Å−3

Data collection: CrysAlis PRO (Agilent, 2013 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015005113/hb7371sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015005113/hb7371Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015005113/hb7371fig1.tif A view of the mol­ecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. CCDC reference: 1053761 Additional supporting information: crystallographic information; 3D view; checkCIF report
C26H30N4O4F(000) = 984
Mr = 462.54Dx = 1.259 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 21.6153 (10) ÅCell parameters from 1750 reflections
b = 8.1227 (4) Åθ = 3.8–27.5°
c = 13.9404 (8) ŵ = 0.09 mm1
β = 94.395 (5)°T = 150 K
V = 2440.4 (2) Å3Block, clear light colourless
Z = 40.4 × 0.3 × 0.3 mm
Agilent SuperNova (Single source at offset, Atlas) diffractometer2900 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1697 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.063
Detector resolution: 10.3705 pixels mm-1θmax = 29.5°, θmin = 2.9°
ω scansh = −18→29
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −10→7
Tmin = 0.613, Tmax = 1.000l = −19→18
6592 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.0338P)2 + 0.0686P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
2900 reflectionsΔρmax = 0.22 e Å3
155 parametersΔρmin = −0.26 e Å3
0 restraints
Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.36.28 (release 01-02-2013 CrysAlis171 .NET) (compiled Feb 1 2013,16:14:44) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O140.34059 (6)0.02364 (17)0.24674 (10)0.0286 (4)
N10.45878 (7)0.29578 (19)0.01458 (12)0.0225 (4)
O170.41066 (7)0.2126 (2)0.29870 (11)0.0385 (4)
N70.34834 (7)0.5212 (2)0.01854 (13)0.0231 (4)
C130.38269 (9)0.1407 (2)0.23355 (16)0.0240 (5)
C60.37626 (9)0.4878 (2)−0.05699 (16)0.0233 (5)
H60.36150.5387−0.11400.028*
C50.42829 (9)0.3787 (2)−0.06151 (16)0.0227 (5)
C80.29823 (9)0.6351 (2)0.00733 (15)0.0213 (5)
C90.29548 (9)0.7593 (2)0.07499 (16)0.0242 (5)
H90.32580.76540.12600.029*
C20.50726 (9)0.2115 (3)−0.01898 (17)0.0285 (5)
H20.53530.14660.01810.034*
C110.44300 (9)0.2904 (3)0.11490 (15)0.0248 (5)
H11A0.43080.39960.13450.030*
H11B0.47940.25810.15560.030*
C120.39047 (9)0.1701 (3)0.12900 (15)0.0247 (5)
H12A0.35210.21350.09830.030*
H12B0.39910.06630.09830.030*
C150.33162 (10)−0.0179 (3)0.34693 (16)0.0307 (6)
H15A0.32050.07960.38200.037*
H15B0.3694−0.06360.37820.037*
C100.25193 (9)0.6253 (2)−0.06747 (16)0.0244 (5)
H100.25280.5411−0.11260.029*
C40.45880 (9)0.3440 (3)−0.14264 (17)0.0283 (5)
H40.44840.3843−0.20420.034*
C30.50810 (10)0.2377 (3)−0.11602 (17)0.0318 (6)
H30.53610.1933−0.15640.038*
C160.28000 (11)−0.1429 (3)0.34458 (18)0.0412 (6)
H16A0.2913−0.23750.30850.062*
H16B0.2427−0.09530.31470.062*
H16C0.2731−0.17560.40910.062*
U11U22U33U12U13U23
O140.0361 (8)0.0298 (9)0.0205 (9)−0.0087 (7)0.0052 (7)−0.0004 (7)
N10.0217 (9)0.0226 (10)0.0236 (10)0.0014 (7)0.0051 (8)0.0034 (8)
O170.0397 (9)0.0498 (11)0.0266 (10)−0.0165 (8)0.0054 (8)−0.0087 (8)
N70.0234 (9)0.0209 (9)0.0255 (10)0.0023 (7)0.0057 (8)−0.0010 (8)
C130.0213 (11)0.0228 (11)0.0283 (13)−0.0002 (9)0.0032 (10)−0.0042 (10)
C60.0258 (11)0.0184 (11)0.0260 (12)−0.0029 (8)0.0042 (10)0.0040 (10)
C50.0241 (10)0.0189 (11)0.0257 (12)0.0002 (8)0.0064 (9)0.0021 (10)
C80.0212 (10)0.0192 (11)0.0242 (12)0.0008 (8)0.0071 (9)0.0028 (10)
C90.0209 (10)0.0260 (12)0.0255 (12)−0.0006 (9)0.0005 (9)−0.0031 (10)
C20.0236 (11)0.0255 (12)0.0375 (14)0.0074 (9)0.0106 (10)0.0027 (11)
C110.0236 (10)0.0270 (12)0.0239 (12)0.0000 (9)0.0019 (9)0.0010 (10)
C120.0262 (11)0.0254 (12)0.0226 (12)0.0010 (9)0.0023 (9)−0.0028 (10)
C150.0414 (13)0.0290 (13)0.0230 (13)−0.0002 (10)0.0102 (11)0.0002 (11)
C100.0260 (11)0.0219 (11)0.0257 (13)0.0001 (9)0.0040 (10)−0.0070 (10)
C40.0323 (12)0.0261 (12)0.0275 (13)0.0012 (9)0.0099 (10)0.0063 (11)
C30.0330 (12)0.0293 (13)0.0351 (15)0.0075 (10)0.0153 (11)0.0018 (11)
C160.0551 (16)0.0357 (14)0.0347 (15)−0.0100 (11)0.0152 (13)0.0024 (12)
O14—C131.338 (2)C2—C31.371 (3)
O14—C151.464 (2)C11—H11A0.9700
N1—C51.381 (3)C11—H11B0.9700
N1—C21.364 (2)C11—C121.522 (3)
N1—C111.465 (3)C12—H12A0.9700
O17—C131.203 (2)C12—H12B0.9700
N7—C61.282 (2)C15—H15A0.9700
N7—C81.424 (2)C15—H15B0.9700
C13—C121.499 (3)C15—C161.507 (3)
C6—H60.9300C10—C9i1.387 (3)
C6—C51.437 (3)C10—H100.9300
C5—C41.381 (3)C4—H40.9300
C8—C91.386 (3)C4—C31.399 (3)
C8—C101.391 (3)C3—H30.9300
C9—H90.9300C16—H16A0.9600
C9—C10i1.387 (3)C16—H16B0.9600
C2—H20.9300C16—H16C0.9600
C13—O14—C15115.83 (16)C12—C11—H11B109.2
C5—N1—C11127.98 (16)C13—C12—C11111.61 (17)
C2—N1—C5108.38 (18)C13—C12—H12A109.3
C2—N1—C11123.62 (18)C13—C12—H12B109.3
C6—N7—C8116.70 (18)C11—C12—H12A109.3
O14—C13—C12112.02 (18)C11—C12—H12B109.3
O17—C13—O14123.3 (2)H12A—C12—H12B108.0
O17—C13—C12124.69 (18)O14—C15—H15A110.4
N7—C6—H6117.1O14—C15—H15B110.4
N7—C6—C5125.9 (2)O14—C15—C16106.64 (18)
C5—C6—H6117.1H15A—C15—H15B108.6
N1—C5—C6126.61 (19)C16—C15—H15A110.4
N1—C5—C4107.45 (17)C16—C15—H15B110.4
C4—C5—C6125.9 (2)C8—C10—H10119.9
C9—C8—N7118.06 (19)C9i—C10—C8120.20 (18)
C9—C8—C10119.07 (18)C9i—C10—H10119.9
C10—C8—N7122.86 (18)C5—C4—H4126.0
C8—C9—H9119.6C5—C4—C3108.1 (2)
C8—C9—C10i120.71 (19)C3—C4—H4126.0
C10i—C9—H9119.6C2—C3—C4106.86 (18)
N1—C2—H2125.4C2—C3—H3126.6
N1—C2—C3109.23 (19)C4—C3—H3126.6
C3—C2—H2125.4C15—C16—H16A109.5
N1—C11—H11A109.2C15—C16—H16B109.5
N1—C11—H11B109.2C15—C16—H16C109.5
N1—C11—C12111.88 (17)H16A—C16—H16B109.5
H11A—C11—H11B107.9H16A—C16—H16C109.5
C12—C11—H11A109.2H16B—C16—H16C109.5
O14—C13—C12—C11−174.17 (16)C5—N1—C11—C1279.5 (2)
N1—C5—C4—C30.5 (2)C5—C4—C3—C2−0.8 (2)
N1—C2—C3—C40.9 (2)C8—N7—C6—C5179.01 (17)
N1—C11—C12—C13169.07 (17)C9—C8—C10—C9i1.3 (3)
O17—C13—C12—C115.8 (3)C2—N1—C5—C6−177.15 (19)
N7—C6—C5—N1−2.6 (3)C2—N1—C5—C40.0 (2)
N7—C6—C5—C4−179.3 (2)C2—N1—C11—C12−98.6 (2)
N7—C8—C9—C10i179.47 (17)C11—N1—C5—C64.5 (3)
N7—C8—C10—C9i−179.52 (18)C11—N1—C5—C4−178.28 (18)
C13—O14—C15—C16176.56 (17)C11—N1—C2—C3177.83 (18)
C6—N7—C8—C9−134.2 (2)C15—O14—C13—O17−2.2 (3)
C6—N7—C8—C1046.7 (3)C15—O14—C13—C12177.75 (16)
C6—C5—C4—C3177.72 (19)C10—C8—C9—C10i−1.4 (3)
C5—N1—C2—C3−0.6 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  {2,2'-[3-Aza-pentane-1,5-diylbis(nitrilo-methyl-idyne)]dipyrrol-1-yl}(4-methyl-pyridine)cobalt(III) tetra-phenyl-borate.

Authors:  Soraia Meghdadi; Mehdi Amirnasr; Kurt Mereiter; Mahmood Karimi Abdolmaleki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-24

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  3 in total

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