Literature DB >> 26029422

Crystal structure of 4-azido-methyl-6-tert-butyl-2H-chromen-2-one.

Nasseem El-Khatatneh1, D Shamala2, K Shivashankar2, Mukhokosi Emma Panzi1, M Mahendra1.   

Abstract

In the title compound, C14H15N3O2, one of the methyl C atoms of the tert-butyl group lies almost in the plane of the chromene ring system [deviation = -0.097 (2) Å], one lies above and one lies below [deviations = 1.460 (3) and 1.006 (3) Å, respectively]. The C-C-N-N torsion angle is 142.33 (17)°. In the crystal, moelcules are linked by weak C-H⋯O hydrogen bonds to generate C(6) chains propagating in the [010] direction.

Entities:  

Keywords:  chromene; coumarin; crystal structure; hydrogen bonding

Year:  2015        PMID: 26029422      PMCID: PMC4438804          DOI: 10.1107/S205698901500290X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to the biological properties of coumarins, see: Basanagouda et al. (2009 ▸); Liu et al. (2008 ▸); Mustafa et al. (2011 ▸); Ronad et al. (2008 ▸); Tian et al. (2000 ▸); Puttaraju et al. (2013 ▸). For a related structure, see: Chandra et al. (2014 ▸).

Experimental

Crystal data

C14H15N3O2 M = 257.29 Monoclinic, a = 10.6816 (7) Å b = 11.1416 (8) Å c = 11.5409 (8) Å β = 100.674 (4)° V = 1349.72 (16) Å3 Z = 4 Cu Kα radiation μ = 0.71 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker X8 Proteum diffractometer 5911 measured reflections 2165 independent reflections 1949 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.132 S = 1.04 2165 reflections 175 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.17 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901500290X/hb7363sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901500290X/hb7363Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901500290X/hb7363Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901500290X/hb7363fig1.tif Perspective diagram of the mol­ecule with 50% probability displacement ellipsoids. Click here for additional data file. b . DOI: 10.1107/S205698901500290X/hb7363fig2.tif Packing diagram of the mol­ecule viewed parallel to the b axis. CCDC reference: 1048730 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H15N3O2F(000) = 544
Mr = 257.29Dx = 1.266 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 2165 reflections
a = 10.6816 (7) Åθ = 5.6–64.5°
b = 11.1416 (8) ŵ = 0.71 mm1
c = 11.5409 (8) ÅT = 293 K
β = 100.674 (4)°Block, pale yellow
V = 1349.72 (16) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker X8 Proteum diffractometer1949 reflections with I > 2σ(I)
Radiation source: Bruker MicroStar microfocus rotating anodeRint = 0.037
Helios multilayer optics monochromatorθmax = 64.5°, θmin = 5.6°
Detector resolution: 10.7 pixels mm-1h = −12→12
φ and ω scansk = −12→12
5911 measured reflectionsl = −13→13
2165 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0667P)2 + 0.2532P] where P = (Fo2 + 2Fc2)/3
2165 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.59056 (12)0.02266 (11)0.31873 (10)0.0633 (4)
O20.43714 (15)0.00517 (14)0.16423 (12)0.0886 (6)
N10.32064 (15)−0.31631 (13)0.42079 (19)0.0852 (7)
N20.29968 (12)−0.42384 (13)0.41655 (12)0.0581 (5)
N30.26741 (17)−0.51960 (15)0.40562 (16)0.0784 (7)
C10.79791 (14)−0.09815 (13)0.63907 (13)0.0464 (5)
C20.68585 (13)−0.15469 (12)0.58820 (12)0.0441 (4)
C30.61248 (13)−0.11775 (12)0.48071 (12)0.0429 (4)
C40.49582 (14)−0.17576 (13)0.42299 (13)0.0478 (5)
C50.43662 (16)−0.13424 (15)0.31759 (14)0.0585 (6)
C60.48347 (19)−0.03397 (17)0.26019 (15)0.0642 (6)
C70.65570 (15)−0.01975 (13)0.42495 (13)0.0493 (5)
C80.76681 (17)0.03930 (15)0.47367 (16)0.0593 (6)
C90.83629 (16)−0.00013 (14)0.57861 (16)0.0566 (5)
C100.88114 (15)−0.14115 (14)0.75389 (14)0.0553 (5)
C110.9105 (3)−0.0370 (2)0.8404 (2)0.0925 (9)
C121.0051 (2)−0.1916 (3)0.7259 (2)0.0969 (10)
C130.8160 (2)−0.2375 (2)0.81437 (18)0.0840 (8)
C140.44697 (15)−0.27965 (14)0.48332 (16)0.0581 (5)
H20.65810−0.219900.626900.0530*
H50.36230−0.172000.280400.0700*
H80.794200.105200.435600.0710*
H90.911300.039600.610600.0680*
H11A0.83230−0.002300.854100.1390*
H11B0.959000.022800.808100.1390*
H11C0.95890−0.065800.913600.1390*
H12A1.05700−0.221600.796900.1450*
H12B1.05020−0.129300.693400.1450*
H12C0.98610−0.255700.669800.1450*
H13A0.73560−0.207900.828200.1260*
H13B0.86890−0.258300.888200.1260*
H13C0.80210−0.307400.764900.1260*
H14A0.50560−0.346500.486400.0700*
H14B0.44200−0.257500.563600.0700*
U11U22U33U12U13U23
O10.0776 (8)0.0686 (8)0.0471 (7)0.0085 (6)0.0204 (6)0.0127 (5)
O20.1016 (11)0.1144 (12)0.0476 (8)0.0252 (9)0.0082 (7)0.0190 (7)
N10.0611 (9)0.0489 (9)0.1292 (15)−0.0037 (7)−0.0249 (9)−0.0015 (8)
N20.0521 (8)0.0577 (9)0.0598 (9)−0.0068 (6)−0.0019 (6)−0.0048 (6)
N30.0802 (11)0.0653 (11)0.0841 (12)−0.0237 (8)0.0010 (9)−0.0092 (8)
C10.0489 (8)0.0428 (8)0.0493 (8)−0.0053 (6)0.0141 (6)−0.0055 (6)
C20.0509 (8)0.0375 (7)0.0453 (8)−0.0036 (6)0.0128 (6)−0.0017 (6)
C30.0502 (8)0.0387 (7)0.0419 (8)0.0032 (6)0.0143 (6)−0.0056 (6)
C40.0539 (8)0.0422 (8)0.0467 (8)0.0079 (6)0.0080 (6)−0.0100 (6)
C50.0616 (10)0.0630 (10)0.0482 (9)0.0110 (8)0.0030 (7)−0.0106 (7)
C60.0770 (12)0.0753 (11)0.0424 (9)0.0209 (9)0.0166 (8)0.0016 (8)
C70.0617 (9)0.0488 (8)0.0422 (8)0.0082 (7)0.0223 (7)0.0029 (6)
C80.0679 (10)0.0516 (9)0.0653 (11)−0.0080 (8)0.0307 (8)0.0070 (7)
C90.0556 (9)0.0527 (9)0.0644 (10)−0.0122 (7)0.0189 (8)−0.0018 (7)
C100.0535 (9)0.0556 (9)0.0541 (9)−0.0116 (7)0.0027 (7)−0.0021 (7)
C110.1146 (18)0.0844 (14)0.0685 (13)−0.0236 (13)−0.0093 (12)−0.0150 (11)
C120.0754 (13)0.1139 (19)0.0993 (17)0.0241 (12)0.0111 (12)0.0184 (14)
C130.0873 (13)0.0933 (15)0.0614 (11)−0.0298 (11)−0.0126 (10)0.0242 (10)
C140.0529 (9)0.0432 (8)0.0715 (10)−0.0048 (7)−0.0059 (7)−0.0042 (7)
O1—C61.370 (2)C10—C121.527 (3)
O1—C71.3763 (19)C10—C131.518 (3)
O2—C61.208 (2)C2—H20.9300
N1—N21.218 (2)C5—H50.9300
N1—C141.466 (2)C8—H80.9300
N2—N31.121 (2)C9—H90.9300
C1—C21.384 (2)C11—H11A0.9600
C1—C91.398 (2)C11—H11B0.9600
C1—C101.530 (2)C11—H11C0.9600
C2—C31.4008 (19)C12—H12A0.9600
C3—C41.452 (2)C12—H12B0.9600
C3—C71.389 (2)C12—H12C0.9600
C4—C51.345 (2)C13—H13A0.9600
C4—C141.494 (2)C13—H13B0.9600
C5—C61.435 (3)C13—H13C0.9600
C7—C81.382 (2)C14—H14A0.9700
C8—C91.370 (3)C14—H14B0.9700
C10—C111.525 (3)
C6—O1—C7121.29 (13)C3—C2—H2119.00
N2—N1—C14116.07 (15)C4—C5—H5119.00
N1—N2—N3172.26 (18)C6—C5—H5119.00
C2—C1—C9117.04 (14)C7—C8—H8120.00
C2—C1—C10122.92 (13)C9—C8—H8120.00
C9—C1—C10120.01 (14)C1—C9—H9119.00
C1—C2—C3122.70 (13)C8—C9—H9119.00
C2—C3—C4124.58 (13)C10—C11—H11A110.00
C2—C3—C7117.50 (13)C10—C11—H11B110.00
C4—C3—C7117.91 (13)C10—C11—H11C109.00
C3—C4—C5118.81 (14)H11A—C11—H11B109.00
C3—C4—C14118.39 (13)H11A—C11—H11C109.00
C5—C4—C14122.81 (15)H11B—C11—H11C109.00
C4—C5—C6122.65 (16)C10—C12—H12A109.00
O1—C6—O2116.67 (17)C10—C12—H12B110.00
O1—C6—C5117.49 (15)C10—C12—H12C109.00
O2—C6—C5125.85 (18)H12A—C12—H12B109.00
O1—C7—C3121.73 (14)H12A—C12—H12C109.00
O1—C7—C8116.95 (14)H12B—C12—H12C109.00
C3—C7—C8121.31 (14)C10—C13—H13A109.00
C7—C8—C9119.38 (15)C10—C13—H13B110.00
C1—C9—C8122.06 (16)C10—C13—H13C109.00
C1—C10—C11110.18 (14)H13A—C13—H13B109.00
C1—C10—C12108.64 (14)H13A—C13—H13C109.00
C1—C10—C13112.18 (14)H13B—C13—H13C109.00
C11—C10—C12109.72 (19)N1—C14—H14A109.00
C11—C10—C13107.06 (16)N1—C14—H14B109.00
C12—C10—C13109.04 (17)C4—C14—H14A109.00
N1—C14—C4110.84 (14)C4—C14—H14B109.00
C1—C2—H2119.00H14A—C14—H14B108.00
C7—O1—C6—O2−175.54 (16)C2—C3—C4—C5−177.54 (15)
C7—O1—C6—C54.2 (2)C2—C3—C4—C142.2 (2)
C6—O1—C7—C3−3.5 (2)C7—C3—C4—C14−178.75 (14)
C6—O1—C7—C8176.23 (16)C2—C3—C7—O1179.59 (13)
N2—N1—C14—C4142.33 (17)C2—C3—C7—C8−0.1 (2)
C10—C1—C2—C3−177.49 (14)C4—C3—C7—O10.5 (2)
C2—C1—C9—C80.1 (2)C4—C3—C7—C8−179.21 (15)
C10—C1—C9—C8177.99 (15)C7—C3—C4—C51.5 (2)
C2—C1—C10—C11−128.80 (18)C3—C4—C5—C6−0.6 (2)
C2—C1—C10—C12110.99 (19)C14—C4—C5—C6179.65 (16)
C2—C1—C10—C13−9.6 (2)C5—C4—C14—N1−7.9 (2)
C9—C1—C2—C30.3 (2)C3—C4—C14—N1172.35 (14)
C9—C1—C10—C12−66.8 (2)C4—C5—C6—O1−2.2 (3)
C9—C1—C10—C13172.62 (15)C4—C5—C6—O2177.53 (19)
C9—C1—C10—C1153.5 (2)C3—C7—C8—C90.5 (2)
C1—C2—C3—C4178.72 (14)O1—C7—C8—C9−179.18 (15)
C1—C2—C3—C7−0.3 (2)C7—C8—C9—C1−0.5 (3)
D—H···AD—HH···AD···AD—H···A
C14—H14A···O2i0.972.553.311 (2)135
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C14H14AO2i 0.972.553.311(2)135

Symmetry code: (i) .

  7 in total

1.  Antimicrobial activity of an endophytic Xylaria sp.YX-28 and identification of its antimicrobial compound 7-amino-4-methylcoumarin.

Authors:  Xiaoli Liu; Mingsheng Dong; Xiaohong Chen; Mei Jiang; Xin Lv; Jianzhong Zhou
Journal:  Appl Microbiol Biotechnol       Date:  2007-12-19       Impact factor: 4.813

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Microwave assisted synthesis of dihydrobenzo[4,5]imidazo[1,2-a]pyrimidin-4-ones; synthesis, in vitro antimicrobial and anticancer activities of novel coumarin substituted dihydrobenzo[4,5]imidazo[1,2-a]pyrimidin-4-ones.

Authors:  Kallimeledoddi B Puttaraju; Kalegowda Shivashankar; M Mahendra; Vijaykumar P Rasal; Ponnuru N Venkata Vivek; Khushboo Rai; Maibam Beebina Chanu
Journal:  Eur J Med Chem       Date:  2013-08-15       Impact factor: 6.514

4.  Synthesis of novel substituted 7-(benzylideneamino)-4-methyl-2H-chromen-2-one derivatives as anti-inflammatory and analgesic agents.

Authors:  Pradeepkumar Ronad; Satyanarayana Dharbamalla; Rajesh Hunshal; Veeresh Maddi
Journal:  Arch Pharm (Weinheim)       Date:  2008-11       Impact factor: 3.751

5.  Synthesis, and antitumor activity of some N1-(coumarin-7-yl) amidrazones and related congeners.

Authors:  Mohammad S Mustafa; Mustafa M El-Abadelah; Malek A Zihlif; Randa G Naffa; Mohammad S Mubarak
Journal:  Molecules       Date:  2011-05-24       Impact factor: 4.411

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  Molecular docking studies of benzimidazopyrimidine and coumarin substituted benzimidazopyrimidine derivatives: As potential human Aurora A kinase inhibitors.

Authors:  Kallimeledoddi B Puttaraju; Sankanahally Srinivasshetty Mahesh; Kalegowda Shivashankar; Neratur Krishnappagowda Lokanath; Mahendra Madegowda
Journal:  Bioinformation       Date:  2014-05-20
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.