Literature DB >> 26026709

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock.

Rahul Tyagi1, Anja Joachim2, Bärbel Ruttkowski2, Bruce A Rosa1, John C Martin1, Kymberlie Hallsworth-Pepin1, Xu Zhang1, Philip Ozersky1, Richard K Wilson1, Shoba Ranganathan3, Paul W Sternberg4, Robin B Gasser5, Makedonka Mitreva6.   

Abstract

Many infectious diseases caused by eukaryotic pathogens have a devastating, long-term impact on animal health and welfare. Hundreds of millions of animals are affected by parasitic nematodes of the order Strongylida. Unlocking the molecular biology of representatives of this order, and understanding nematode-host interactions, drug resistance and disease using advanced technologies could lead to entirely new ways of controlling the diseases that they cause. Oesophagostomum dentatum (nodule worm; superfamily Strongyloidea) is an economically important strongylid nematode parasite of swine worldwide. The present article reports recent advances made in biology and animal biotechnology through the draft genome and developmental transcriptome of O. dentatum, in order to support biological research of this and related parasitic nematodes as well as the search for new and improved interventions. This first genome of any member of the Strongyloidea is 443 Mb in size and predicted to encode 25,291 protein-coding genes. Here, we review the dynamics of transcription throughout the life cycle of O. dentatum, describe double-stranded RNA interference (RNAi) machinery and infer molecules involved in development and reproduction, and in inducing or modulating immune responses or disease. The secretome predicted for O. dentatum is particularly rich in peptidases linked to interactions with host tissues and/or feeding activity, and a diverse array of molecules likely involved in immune responses. This research progress provides an important resource for future comparative genomic and molecular biological investigations as well as for biotechnological research toward new anthelmintics, vaccines and diagnostic tests.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bioinformatics; Biotechnology; Genomics; Livestock; Nodule worm disease; Transcriptomics

Mesh:

Substances:

Year:  2015        PMID: 26026709      PMCID: PMC4746232          DOI: 10.1016/j.biotechadv.2015.05.004

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  131 in total

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Authors:  Isabel Vercauteren; Peter Geldhof; Iris Peelaers; Edwin Claerebout; Geert Berx; Jozef Vercruysse
Journal:  Mol Biochem Parasitol       Date:  2003-02       Impact factor: 1.759

Review 2.  Molecular biology of reproduction and development in parasitic nematodes: progress and opportunities.

Authors:  Alasdair J Nisbet; Pauline Cottee; Robin B Gasser
Journal:  Int J Parasitol       Date:  2004-02       Impact factor: 3.981

3.  X-ray structure of Na-ASP-2, a pathogenesis-related-1 protein from the nematode parasite, Necator americanus, and a vaccine antigen for human hookworm infection.

Authors:  Oluwatoyin A Asojo; Gaddam Goud; Kajari Dhar; Alex Loukas; Bin Zhan; Vehid Deumic; Sen Liu; Gloria E O Borgstahl; Peter J Hotez
Journal:  J Mol Biol       Date:  2005-01-12       Impact factor: 5.469

4.  Cloning and characterization of Ancylostoma-secreted protein. A novel protein associated with the transition to parasitism by infective hookworm larvae.

Authors:  J M Hawdon; B F Jones; D R Hoffman; P J Hotez
Journal:  J Biol Chem       Date:  1996-03-22       Impact factor: 5.157

5.  Oesophagostomum dentatum: expression patterns of enzymes involved in eicosanoid production.

Authors:  A Joachim; B Ruttkowski; A Daugschies
Journal:  Parasitol Int       Date:  2001-09       Impact factor: 2.230

6.  mRNA sequences for Haemonchus contortus intestinal cathepsin B-like cysteine proteases display an extreme in abundance and diversity compared with other adult mammalian parasitic nematodes.

Authors:  Douglas P Jasmer; Makedonka Dautova Mitreva; James P McCarter
Journal:  Mol Biochem Parasitol       Date:  2004-10       Impact factor: 1.759

7.  CRN-1, a Caenorhabditis elegans FEN-1 homologue, cooperates with CPS-6/EndoG to promote apoptotic DNA degradation.

Authors:  Jay Z Parrish; Chonglin Yang; Binghui Shen; Ding Xue
Journal:  EMBO J       Date:  2003-07-01       Impact factor: 11.598

8.  A hookworm glycoprotein that inhibits neutrophil function is a ligand of the integrin CD11b/CD18.

Authors:  M Moyle; D L Foster; D E McGrath; S M Brown; Y Laroche; J De Meutter; P Stanssens; C A Bogowitz; V A Fried; J A Ely
Journal:  J Biol Chem       Date:  1994-04-01       Impact factor: 5.157

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

10.  NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.

Authors:  Todd Wylie; John Martin; Sahar Abubucker; Yong Yin; David Messina; Zhengyuan Wang; James P McCarter; Makedonka Mitreva
Journal:  BMC Genomics       Date:  2008-11-04       Impact factor: 3.969

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  7 in total

1.  Gender and developmental specific N-glycomes of the porcine parasite Oesophagostomum dentatum.

Authors:  Carmen Jiménez-Castells; Jorick Vanbeselaere; Sonja Kohlhuber; Bärbel Ruttkowski; Anja Joachim; Katharina Paschinger
Journal:  Biochim Biophys Acta Gen Subj       Date:  2016-10-15       Impact factor: 3.770

2.  Genomes of Fasciola hepatica from the Americas Reveal Colonization with Neorickettsia Endobacteria Related to the Agents of Potomac Horse and Human Sennetsu Fevers.

Authors:  Samantha N McNulty; Jose F Tort; Gabriel Rinaldi; Kerstin Fischer; Bruce A Rosa; Pablo Smircich; Santiago Fontenla; Young-Jun Choi; Rahul Tyagi; Kymberlie Hallsworth-Pepin; Victoria H Mann; Lakshmi Kammili; Patricia S Latham; Nicolas Dell'Oca; Fernanda Dominguez; Carlos Carmona; Peter U Fischer; Paul J Brindley; Makedonka Mitreva
Journal:  PLoS Genet       Date:  2017-01-06       Impact factor: 5.917

Review 3.  Metazoan Parasite Vaccines: Present Status and Future Prospects.

Authors:  Christian Stutzer; Sabine A Richards; Mariette Ferreira; Samantha Baron; Christine Maritz-Olivier
Journal:  Front Cell Infect Microbiol       Date:  2018-03-13       Impact factor: 5.293

4.  Improving eukaryotic genome annotation using single molecule mRNA sequencing.

Authors:  Vincent Magrini; Xin Gao; Bruce A Rosa; Sean McGrath; Xu Zhang; Kymberlie Hallsworth-Pepin; John Martin; John Hawdon; Richard K Wilson; Makedonka Mitreva
Journal:  BMC Genomics       Date:  2018-03-01       Impact factor: 3.969

5.  Genus-level evolutionary relationships of FAR proteins reflect the diversity of lifestyles of free-living and parasitic nematodes.

Authors:  Dongjuan Yuan; Song Li; Ziyu Shang; Muchun Wan; Yu Lin; Yanhua Zhang; Yaoyu Feng; Lian Xu; Lihua Xiao
Journal:  BMC Biol       Date:  2021-08-30       Impact factor: 7.431

6.  Comparative genomics of the major parasitic worms.

Authors: 
Journal:  Nat Genet       Date:  2018-11-05       Impact factor: 38.330

7.  Analysis of the Trichuris suis excretory/secretory proteins as a function of life cycle stage and their immunomodulatory properties.

Authors:  Louis-Philippe Leroux; Mohamad Nasr; Rajesh Valanparambil; Mifong Tam; Bruce A Rosa; Elizabeth Siciliani; Dolores E Hill; Dante S Zarlenga; Maritza Jaramillo; Joel V Weinstock; Timothy G Geary; Mary M Stevenson; Joseph F Urban; Makedonka Mitreva; Armando Jardim
Journal:  Sci Rep       Date:  2018-10-29       Impact factor: 4.379

  7 in total

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