| Literature DB >> 26023943 |
M Angeles García1, M Angeles Farrán2, Dolores Santa María3, Rosa M Claramunt4, M Carmen Torralba5, M Rosario Torres6, Carlos Jaime7, José Elguero8.
Abstract
The association constants of the complexes formed by two hosts containing pyrrole, amide and azine (pyridine and 1,8-naphthyridine) groups and six guests, all monoanions (Cl-, CH3CO2-, NO3-, H2PO4-, BF4-, PF6-), have been determined using NMR titrations. The X-ray crystal structure of the host N2,N5-bis(6-methylpyridin-2-yl)-3,4-diphenyl-1H-pyrrole- 2,5-dicarboxamide (1) has been solved (P21/c monoclinic space group). B3LYP/6-31G(d,p) and calculations were carried out in an attempt to rationalize the trends observed in the experimental association constants.Entities:
Keywords: B3LYP/6-31G(d,p) calculations; NMR titrations; X-ray structures; anion binding; association constants
Mesh:
Substances:
Year: 2015 PMID: 26023943 PMCID: PMC6272551 DOI: 10.3390/molecules20069862
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Structures of the hosts 1 and 2.
Figure 2(a) ORTEP plot (40% ellipsoid probability) of 1 showing the labeling of the asymmetric unit; (b) View of the 1 dimer (12); (c) The structure of 2 with a water and a DMSO molecule from reference [10].
Hydrogen bonds (Å and °) for compound 1.
| D-H···A | Symmetry Operation | d(D-H) | d(H···A) | d(D···A) | <(DHA) |
|---|---|---|---|---|---|
| N1-H1···O3 | 1 | 2.18 | 3.151(5) | 162.5 | |
| O3-H3B···O1 | 1.07 | 2.09 | 2.855(4) | 126.2 | |
| O3-H3A···N5(#1) | (#1) –x + 1, –y, –z | 1.05 | 2.07 | 3.097(5) | 165.6 |
Experimental determination of the association constants K (M−1).
| Host | Guest | H3 | Amide NH | Mean |
|---|---|---|---|---|
|
| BF4− | 702 ± 22 | 595 a ± 123 | 648.5 |
|
| CH3CO2− | 37 ± 8 | 24 ± 5 | 30.5 |
|
| NO3− | 0 | --- | |
|
| H2PO4− | 10005 ± 65 | --- | |
|
| PF6− | 0 | --- | |
|
| Cl− | 0 | --- | |
|
| BF4− | 0 | --- | |
|
| CH3CO2− | 312 ± 48 | 294 ± 30 | 303 |
|
| NO3− | 0 | --- | |
|
| H2PO4− | 440 ± 47 | --- | |
|
| PF6− | 0 | --- | |
|
| Cl− | 3748 ± 106 | --- |
a Using the pyrrole N–H the value is 560 ± 153.
The experimental and calculated host-guest interaction energies (ΔG) (underlined, assumed values). All Δ values in kJ·mol−1.
| Host | Guest | Exp.
| Exp. Δ | Calc. Δ |
|---|---|---|---|---|
| 1 | BF4− | 648.5 | −16.1 | −57.2 |
| 1 | CH3CO2− | 30.5 | −8.5 | −131.8 |
| 1 | H2PO4− | 10005 | −23.0 | −104.6 |
| 2 | BF4− |
|
| −69.3 |
| 2 | CH3CO2− | 303 | −14.3 | −140.2 |
| 2 | H2PO4− | 440 | −15.2 | −75.9 |
Figure 3Optimized geometries of hosts 1 and 2. (a) 1·X-ray; (b) 1·preorganized; (c) 2·X-ray; (d) 2·preorganized. C2O is the geometry where the C=O of the urea groups pointed towards the pyrrole NH.
Energies (E) and free energies (G) in hartrees as well as corresponding energy differences in kJ·mol−1 of hosts 1 and 2 using as starting points the X-ray and preorganized geometries.
| Host | Structure | ||||
|---|---|---|---|---|---|
|
| X-ray | −1582.58265 | 0.0 | −1582.15847 | 0.0 |
|
| preorganized | −1582.56048 | 58.2 | −1582.13729 | 55.6 |
|
| X-ray | −1921.95091 | 0.0 | −1921.45682 | 0.0 |
|
| preorganized | −1921.93051 | 53.6 | −1921.44290 | 36.5 |
Results of the B3LYP/6-31G(d,p) calculations. The column reporting the symmetry of the complex indicates the geometry of the closest one, e.g., C2 means that the geometry is close to C2.
| Complex | Symmetry | Δ | Δ | |||
|---|---|---|---|---|---|---|
| −1582.15847 | −424.51203 | −2006.69234 |
| −0.0218 | −57.2 | |
| −1582.15847 | −228.48139 | −1810.69007 |
| −0.0502 | −131.8 | |
| −1582.15847 | −643.59035 | −2225.78867 |
| −0.0398 | −104.6 | |
| −1921.45682 | −424.51203 | −2345.99517 |
| −0.0264 | −69.3 | |
| −1921.45682 | −228.48139 | −2149.99162 |
| −0.0534 | −140.2 | |
| −1921.45682 | −643.59035 | −2565.07605 |
| −0.0289 | −75.9 |
Figure 4Optimized geometries of the six studied complexes.
Calculated geometries of the hydrogen bonds.
| Host | Guest | Distances (Å) | Angles (°) |
|---|---|---|---|
|
| BF4− | dN(pyrrole)–H = 1.026 | (pyrrole)N–H···F1 = 158.4 |
| dN(amide)–H = 1.026 | (amide)N–H···F2 = 167.5 | ||
| dF1···H–N(pyrrole) = 1.752 | (amide)N–H···F3 = 160.4 | ||
| dF2···H–N(amide) = 1.774 | |||
| dF3···H–N(amide) = 1.823 | |||
|
| BF4− | dN(pyrrole)–H = 1.026 | (pyrrole)N–H···F1 = 124.7 |
| dN(amide)–H = 1.024 | (pyrrole)N–H···F2 = 164.2 | ||
| dF1···H–N(pyrrole) = 2.214 | (amide)N–H···F1 = 158.5 | ||
| dF2···H–N(pyrrole) = 1.703 | (amide)N–H···F2 = 163.4 | ||
| dF1···H–N(amide) = 1.812 | |||
| dF2···H–N(amide) = 1.864 | |||
|
| CH3CO2− | dN(pyrrole)–H = 1.071 | (pyrrole)N–H···O1 =167.1 |
| dN(amide)–H = 1.041 | (amide)N–H···O1 =171.8 | ||
| dO1···H–N(pyrrole) = 1.562 | (amide)N–H···O2 =175.0 | ||
| dO1···H–N(amide) = 1.785 | |||
| dO2···H–N(amide) = 1.743 | |||
|
| CH3CO2− | dN(pyrrole)–H = 1.086 | (pyrrole)N–H···O1 =168.6 |
| dN(amide)–H = 1.045 | (amide)N–H···O1 =172.6 | ||
| dO1···H–N(pyrrole) = 1.511 | (amide)N–H···O2 =173.5 | ||
| dO1···H–N(amide) = 1.747 | |||
| dO2···H–N(amide) = 1.694 | |||
|
| H2PO4− | dN(pyrrole)–H = 1.727 | (pyrrole)N–H···O1 = 161.1 |
| dN(amide)–H = 1.016 | (amide)N–H···O1 = 170.1 | ||
| dO1···H–N(pyrrole) = 1.014 | O2–H···N(pyridine) = 169.8 | ||
| dO1···H–N(amide) = 1.921 | O3–H···N(pyridine) = 166.6 | ||
| dO2–H···N(pyridine) = 1.753 | |||
| dO3–H···N(pyridine) = 1.694 | |||
|
| H2PO4− | dN(pyrrole)–H = 1.723 | (pyrrole)N–H···O1 = 173.5 |
| dO1···H–N(pyrrole) = 1.006 | O2–H···O=C(amide) =169.1 | ||
| dO2–H···O=C(amide) = 1.844 | O3–H···O=C(amide) =176.7 | ||
| dO2–H···O=C(amide) = 1.807 |
Figure 5Evolution of the 1H-NMR spectra in CDCl3: (a) of 1 upon addition of H2PO4−; (b) of 2 upon addition of H2PO4−, from 0 to 1.1 equiv.
Figure 6Job plot titration for 2: H2PO4− (3 mM).
Crystal data and structure refinement for host 1.
| CCDC | 1045562 |
|---|---|
| Empirical formula | [C30H27N5O3] |
| Formula weight | 505.57 |
| Crystal system | Monoclinic |
| Space group | |
| Space group number | 14 |
| 8.319(1) | |
| 16.584(3) | |
| 19.617(3) | |
| α (°) | 90.0 |
| β (°) | 98.994(3) |
| γ (°) | 90.0 |
| 2673.2(7) | |
|
| 4 |
| 1064 | |
| ρc/g·cm−3 | 1.256 |
| μ/mm−1 | 0.083 |
|
| (−9, −19, −23) to (9, 16, 23) |
|
| 1.62 to 25.01 |
|
| 20093 |
|
| 4675 (Rint = 0.0883) |
|
| 99.4 |
|
| 4675/0/343 |
|
| 1961 |
|
| 0.0616 (6.2%) |
|
| 0.1790 |
Σ[|F| −|F|]/Σ[|F|; {Σ[w(F2−F2)2] / Σ[w(F2)2]}1/2.