Literature DB >> 2602378

Predictions of structural elements for the binding of Hin recombinase with the hix site of DNA.

K W Plaxco1, A M Mathiowetz, W A Goddard.   

Abstract

Molecular dynamics simulations were coupled with experimental data from biochemistry and genetics to generate a theoretical structure for the binding domain of Hin recombinase complexed with the hix site of DNA. The theoretical model explains the observed sequence specificity of Hin recombinase and leads to a number of testable predictions concerning altered sequence selectivity for various mutants of protein and DNA.

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Year:  1989        PMID: 2602378      PMCID: PMC298598          DOI: 10.1073/pnas.86.24.9841

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

1.  DNA-binding properties of the Hin recombinase.

Authors:  A C Glasgow; M F Bruist; M I Simon
Journal:  J Biol Chem       Date:  1989-06-15       Impact factor: 5.157

2.  Phase variation in Salmonella: analysis of Hin recombinase and hix recombination site interaction in vivo.

Authors:  K T Hughes; P Youderian; M I Simon
Journal:  Genes Dev       Date:  1988-08       Impact factor: 11.361

3.  Synthesis of a site-specific DNA-binding peptide.

Authors:  M F Bruist; S J Horvath; L E Hood; T A Steitz; M I Simon
Journal:  Science       Date:  1987-02-13       Impact factor: 47.728

4.  Structure of the lambda complex at 2.5 A resolution: details of the repressor-operator interactions.

Authors:  S R Jordan; C O Pabo
Journal:  Science       Date:  1988-11-11       Impact factor: 47.728

5.  Combinatorial cassette mutagenesis as a probe of the informational content of protein sequences.

Authors:  J F Reidhaar-Olson; R T Sauer
Journal:  Science       Date:  1988-07-01       Impact factor: 47.728

6.  The molecular basis of DNA-protein recognition inferred from the structure of cro repressor.

Authors:  D H Ohlendorf; W F Anderson; R G Fisher; Y Takeda; B W Matthews
Journal:  Nature       Date:  1982-08-19       Impact factor: 49.962

7.  High resolution structural studies of Cro repressor protein and implications for DNA recognition.

Authors:  D H Ohlendorf; W F Anderson; Y Takeda; B W Matthews
Journal:  J Biomol Struct Dyn       Date:  1983-10

8.  Synthesis of a sequence-specific DNA-cleaving peptide.

Authors:  J P Sluka; S J Horvath; M F Bruist; M I Simon; P B Dervan
Journal:  Science       Date:  1987-11-20       Impact factor: 47.728

  8 in total
  1 in total

1.  Building proteins from C alpha coordinates using the dihedral probability grid Monte Carlo method.

Authors:  A M Mathiowetz; W A Goddard
Journal:  Protein Sci       Date:  1995-06       Impact factor: 6.725

  1 in total

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