Literature DB >> 26020500

MAGI: visualization and collaborative annotation of genomic aberrations.

Mark D M Leiserson1, Connor C Gramazio2, Jason Hu2, Hsin-Ta Wu1, David H Laidlaw1, Benjamin J Raphael1.   

Abstract

Mesh:

Year:  2015        PMID: 26020500     DOI: 10.1038/nmeth.3412

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  6 in total

1.  The Cancer Genome Atlas Pan-Cancer analysis project.

Authors:  John N Weinstein; Eric A Collisson; Gordon B Mills; Kenna R Mills Shaw; Brad A Ozenberger; Kyle Ellrott; Ilya Shmulevich; Chris Sander; Joshua M Stuart
Journal:  Nat Genet       Date:  2013-10       Impact factor: 38.330

Review 2.  Expanding the computational toolbox for mining cancer genomes.

Authors:  Li Ding; Michael C Wendl; Joshua F McMichael; Benjamin J Raphael
Journal:  Nat Rev Genet       Date:  2014-07-08       Impact factor: 53.242

3.  Comprehensive molecular characterization of human colon and rectal cancer.

Authors: 
Journal:  Nature       Date:  2012-07-18       Impact factor: 49.962

4.  Discovery and saturation analysis of cancer genes across 21 tumour types.

Authors:  Michael S Lawrence; Petar Stojanov; Craig H Mermel; James T Robinson; Levi A Garraway; Todd R Golub; Matthew Meyerson; Stacey B Gabriel; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2014-01-05       Impact factor: 49.962

Review 5.  Visualizing multidimensional cancer genomics data.

Authors:  Michael P Schroeder; Abel Gonzalez-Perez; Nuria Lopez-Bigas
Journal:  Genome Med       Date:  2013-01-31       Impact factor: 11.117

6.  Comprehensive molecular characterization of gastric adenocarcinoma.

Authors: 
Journal:  Nature       Date:  2014-07-23       Impact factor: 49.962

  6 in total
  11 in total

1.  Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma.

Authors: 
Journal:  Cancer Cell       Date:  2017-08-14       Impact factor: 31.743

Review 2.  Precision Oncology: The Road Ahead.

Authors:  Daniela Senft; Mark D M Leiserson; Eytan Ruppin; Ze'ev A Ronai
Journal:  Trends Mol Med       Date:  2017-09-05       Impact factor: 11.951

3.  GenVisR: Genomic Visualizations in R.

Authors:  Zachary L Skidmore; Alex H Wagner; Robert Lesurf; Katie M Campbell; Jason Kunisaki; Obi L Griffith; Malachi Griffith
Journal:  Bioinformatics       Date:  2016-06-10       Impact factor: 6.937

Review 4.  Challenges for visualizing three-dimensional data in genomic browsers.

Authors:  Mike Goodstadt; Marc A Marti-Renom
Journal:  FEBS Lett       Date:  2017-08-24       Impact factor: 4.124

5.  MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers.

Authors:  Alexis Allot; Kirsley Chennen; Yannis Nevers; Laetitia Poidevin; Arnaud Kress; Raymond Ripp; Julie Dawn Thompson; Olivier Poch; Odile Lecompte
Journal:  J Med Internet Res       Date:  2017-06-16       Impact factor: 5.428

6.  LnChrom: a resource of experimentally validated lncRNA-chromatin interactions in human and mouse.

Authors:  Fulong Yu; Guanxiong Zhang; Aiai Shi; Jing Hu; Feng Li; Xinxin Zhang; Yan Zhang; Jian Huang; Yun Xiao; Xia Li; Shujun Cheng
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

7.  Integrative clinical genomics of metastatic cancer.

Authors:  Dan R Robinson; Yi-Mi Wu; Robert J Lonigro; Pankaj Vats; Erin Cobain; Jessica Everett; Xuhong Cao; Erica Rabban; Chandan Kumar-Sinha; Victoria Raymond; Scott Schuetze; Ajjai Alva; Javed Siddiqui; Rashmi Chugh; Francis Worden; Mark M Zalupski; Jeffrey Innis; Rajen J Mody; Scott A Tomlins; David Lucas; Laurence H Baker; Nithya Ramnath; Ann F Schott; Daniel F Hayes; Joseph Vijai; Kenneth Offit; Elena M Stoffel; J Scott Roberts; David C Smith; Lakshmi P Kunju; Moshe Talpaz; Marcin Cieślik; Arul M Chinnaiyan
Journal:  Nature       Date:  2017-08-02       Impact factor: 49.962

8.  DriverDBv2: a database for human cancer driver gene research.

Authors:  I-Fang Chung; Chen-Yang Chen; Shih-Chieh Su; Chia-Yang Li; Kou-Juey Wu; Hsei-Wei Wang; Wei-Chung Cheng
Journal:  Nucleic Acids Res       Date:  2015-12-03       Impact factor: 16.971

9.  Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz.

Authors:  Justin Wagner; Jayaram Kancherla; Domenick Braccia; James Matsumara; Victor Felix; Jonathan Crabtree; Anup Mahurkar; Héctor Corrada Bravo
Journal:  F1000Res       Date:  2020-06-12

Review 10.  De novo Mutations (DNMs) in Autism Spectrum Disorder (ASD): Pathway and Network Analysis.

Authors:  Aitana Alonso-Gonzalez; Cristina Rodriguez-Fontenla; Angel Carracedo
Journal:  Front Genet       Date:  2018-09-21       Impact factor: 4.599

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