Literature DB >> 26020120

The effect of composition on diffusion of macromolecules in a crowded environment.

Svyatoslav Kondrat1, Olav Zimmermann, Wolfgang Wiechert, Eric von Lieres.   

Abstract

We study diffusion of macromolecules in a crowded cytoplasm-like environment, focusing on its dependence on composition and its crossover to the anomalous subdiffusion. The crossover and the diffusion itself depend on both the volume fraction and the relative concentration of macromolecules. In accordance with previous theoretical and experimental studies, diffusion slows down when the volume fraction increases. Contrary to expectations, however, the diffusion is also strongly dependent on the molecular composition. The crossover time decreases and diffusion slows down when the smaller macromolecules start to dominate. Interestingly, diffusion is faster in a cytoplasm-like (more polydisperse) system than it is in a two-component system, at comparable packing fractions, or even when the cytoplasm packing fraction is larger.

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Year:  2015        PMID: 26020120     DOI: 10.1088/1478-3975/12/4/046003

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  5 in total

Review 1.  Mechanisms and Effects of Substrate Channelling in Enzymatic Cascades.

Authors:  Svyatoslav Kondrat; Eric von Lieres
Journal:  Methods Mol Biol       Date:  2022

2.  Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.

Authors:  Michael Feig; Isseki Yu; Po-Hung Wang; Grzegorz Nawrocki; Yuji Sugita
Journal:  J Phys Chem B       Date:  2017-07-12       Impact factor: 2.991

3.  Does metabolite channeling accelerate enzyme-catalyzed cascade reactions?

Authors:  Liubov Poshyvailo; Eric von Lieres; Svyatoslav Kondrat
Journal:  PLoS One       Date:  2017-02-24       Impact factor: 3.240

4.  Dynamic cluster formation determines viscosity and diffusion in dense protein solutions.

Authors:  Sören von Bülow; Marc Siggel; Max Linke; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-29       Impact factor: 11.205

5.  Can enzyme proximity accelerate cascade reactions?

Authors:  Andrij Kuzmak; Sheiliza Carmali; Eric von Lieres; Alan J Russell; Svyatoslav Kondrat
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379

  5 in total

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