| Literature DB >> 26018356 |
Yoshimasa Hirashima1, Tomoko Kato, Makoto Yamakawa, Hiroaki Shirafuji, Ryoichi Okano, Tohru Yanase.
Abstract
In Japan in 2013, two cattle in the northwestern part of Kagoshima Prefecture developed fever and swallowing difficulty and were suspected of having Ibaraki disease. The epizootic hemorrhagic virus (EHDV) genome was detected from diseased and asymptomatic cattle by reverse transcription-polymerase chain reaction (RT-PCR). High neutralization antibody titers to Ibaraki virus (IBAV) ranging from 1:128 to 1:1,024 were observed in the RT-PCR-positive cattle, and the virus was isolated in one of the IBAV-positive farms. A pairwise alignment and phylogenetic analysis based on the major outer coat protein VP2 encoded in segment 2 revealed a close relationship between the isolated viruses and previous IBAV isolates. The phylogeny of VP2 also suggested that an IBAV variant isolated in 1997 was distinct from IBAV and sorted into a heterogeneous serotype, EHDV serotype 7. The findings revealed the reemergence of Ibaraki disease in Japan after a 26-year absence. Interestingly, the co-circulation of EHDV serotype 1 with IBAV was observed in the affected region, suggesting the potential reassortment between two heterogeneous serotypes in the field. Sentinel surveillance in Kagoshima Prefecture indicated that the incursion of IBAV occurred in October 2013 and that its spread was limited within the small area. Inadequate environmental temperatures for vector transmission in late autumn might have limited the virus spread to a wider region. The reemergence of Ibaraki disease showed us the importance of continuous vaccination to prevent economic losses.Entities:
Mesh:
Year: 2015 PMID: 26018356 PMCID: PMC4638292 DOI: 10.1292/jvms.15-0039
Source DB: PubMed Journal: J Vet Med Sci ISSN: 0916-7250 Impact factor: 1.267
Oligonucleotide sequences for RT-PCR assays and sequencing for segment 2 of EHDVs
| Oligonucleotidea) | Sequence (5′–3′) | Position | Purpose | References |
|---|---|---|---|---|
| IBAVL2-1-17F | GTTAAATTGTCCCCAGA | 1–17 | RT-PCR, sequencing | |
| IBAVL2-552-571F | CTATGCATCGGGTCAGGAAC | 552–571 | sequencing | |
| IBAVL2-1107-1126F | GCCATATGGGGAGATAATAG | 1107–1126 | sequencing | |
| EHDIBAL2F | TACGCAAGGTAAGAGACCAGA | 1667–1687 | RT-PCR, sequencing | |
| IBAVL2-2284-2305F | ATGAGGACCTATTACCAATGTA | 2284–2305 | sequencing | |
| IBAVL2-661-642R | GTTCTTCCTGAAACATCAAC | 661–642 | sequencing | |
| IBAVL2-1212-1193R | GCCACATCATATCTGTTCGC | 1212–1193 | sequencing | |
| IBAVL2-1785-1766R | CAGTCATACAGAACGCTCGG | 1785–1766 | sequencing | |
| EHDIBAL2R-2 | TCTTCTCCACCTCTTGCATT | 2283–2264 | RT-PCR, sequencing | |
| IBAL2R | GTAAGTTTGTTGTTCCCAGTAAACC | 3002–2978 | RT-PCR, sequencing | [ |
| EHDV-1/S2/103-124F | ATATCCTGGCGGAACCATATGG | 103–124 | RT-PCR, sequencing | [ |
| EHDV-1/S2/462-481F | GCTCGCATACACCTATGAAT | 462–481 | sequencing | |
| EHDV-1/S2/609-590R | ACATCTGGTCGACTATGCCT | 609–590 | sequencing | |
| EHDV-1/S2/1021-1001R | ATCTGCCTGATGTGGTGTTTG | 1021–1001 | RT-PCR, sequencing | [ |
| EHD97L2F | GATGCGATCCTATACAACCATC | 499–520 | RT-PCR | |
| EHD97L2R | AATCGTCAGCACTCTGGTTATC | 868–847 | RT-PCR | |
a) Oligonucleotide primers were designed from Ibaraki (Genbank accession number: Ibaraki-2 (AM745078), DPP2209 (HM156728) and KSB-14/E/97 (AB078628) strain/isolates for IBAV, EHDV serotype 1 and IBAV1997 variant, respectively.
List of EHDVs used for phylogenetic analysis in this study
| Strain/isolate | Serotype | Location (year) | Isolation source | GenBank accession No. | ||
|---|---|---|---|---|---|---|
| Segment 2 | Segment 3 | |||||
| Ibaraki-2 | 2 | Japan (1959) | Affected cattle | AB078620 | AB078621 | |
| Y87061 | 2 | Japan (1987) | Cattle | AB078624 | AB078625 | |
| KSB-14/E/97 | Untyped | Japan (1997) | Cattle | AB078628 | AB078629 | |
| KS-7/E/13 | Untyped | Japan (2013) | Cattle | LC018714 | LC042608 | |
| Kawanabe | 1 | Japan (1984) | Cattle | — | LC042606 | |
| KS-1/E/13 | Untyped | Japan (2013) | Cattle | — | LC042607 | |
| New Jersey | 1 | U.S.A. (1955) | White-tailed deer | NC_013397 | AM744979 | |
| Ib Ar 22619 | 1 | Nigeria (1967) | AM745008 | AM745009 | ||
| Alberta | 2 | Canada (1962) | White-tailed deer | AM744998 | AM744999 | |
| CSIRO 439 | 2 | Australia (1979) | Cattle | AM744988 | AM744989 | |
| Ib Ar 33853 | 4 | Nigeria (1968) | AM745018 | AM745019 | ||
| CSIRO 157 | 5 | Australia (1977) | Cattle | AM745028 | AM745029 | |
| CSIRO 753 | 6 | Australia (1981) | Cattle | AM745038 | AM745039 | |
| 318 | 6 | Bahrain (1983) | Cattle | AM745068 | AM745069 | |
| CSIRO 775 | 7 | Australia (1981) | Cattle | AM745048 | AM745049 | |
| DPP59 | 8 | Australia (1982) | Cattle | AM745058 | AM745059 | |
Fig. 1.Geographical distribution of clinical cases and IBAV seroprevalence in Kagoshima Prefecture, Japan.
RT-PCRs and serological tests to detect the prevalence of EHDV in cattle sampled in the farms where clinical cases were observed
| Farm | Cattle | RT-PCR | Virus isolationb) | Titer of neutralizing antibody | |||||
|---|---|---|---|---|---|---|---|---|---|
| Ibaraki-2c) | KS-1/E/13 c) | ||||||||
| EHDV segment 3 | IBAV segment 2 | HmLu-1 | BHK-21 | pre | post | pre | post | ||
| A | A-1a) | + | + | – | NT | 1,024 | 1,024 | 2 | 2 |
| A-2 | + | – | – | NT | 2 | 8 | 2 | 256 | |
| A-3 | + | + | – | NT | 2 | 512 | <2 | <2 | |
| A-4 | – | – | – | NT | <2 | 16 | <2 | <2 | |
| A-5 | – | – | – | NT | <2 | <2 | <2 | <2 | |
| A-6 | – | – | – | NT | <2 | <2 | <2 | <2 | |
| B | B-1 a) | + | + | – | – | 128 | 1,024 | 4 | 2 |
| B-2 | – | – | – | – | <2 | 512 | <2 | 2 | |
| B-3 | + | – | – | – | 512 | 256 | 2 | 2 | |
| B-4 | – | – | – | – | <2 | 512 | <2 | 2 | |
| B-5 | + | – | – | – | 2 | 4 | 16 | 128 | |
| B-6 | + | + | – | – | 64 | 128 | <2 | 8 | |
| B-7 | + | + | – | + (KS-7/E/13) | 8 | 256 | <2 | <2 | |
| B-8 | – | – | – | – | <2 | 2 | <2 | <2 | |
| B-9 | + | – | – | + (KS-8/E/13) | <2 | 128 | <2 | 2 | |
a) Cattle showing swallowing difficulty, b) Parenthesis indicates virus isolate, c) EHDV isolates used for VNTs, NT: not tested.
Fig. 2.Electrophoretic analysis of the RT-PCR product from segment 2 of EHDV isolates using IBAV-specific (A), EHDV serotype 1-specific (B) and IBAV 1997 variant-specific (C) primer pairs. Each primer set expectedly generates a specific product with the lengths 617, 919 and 370 bp, respectively. Lanes: 1, KS-1/E/13; 2, KS-2/E/13; 3, KS-5/P/13; 4, KS-7/E/13; 5, KS-8/E/13; 6, Ibaraki-2 (positive control for IBAV); 7, Kawanabe (positive control for EHDV serotype 1); 8, KSB-14/E/97 (positive control for IBAV 1997 variant); 9, negative water control; M, 100 bp DNA ladder.
Fig. 3.Phylogenetic comparison of the partial nucleotide sequence of segment 3 of Japanese field isolates and reference strains of EHDV. Detailed information of the viruses used is given in Table 2. All Japanese isolates are highlighted in bold face. Bootstrap values (%) are indicated at the appropriate nodes. The scale presents the number of substitutions per site.
Fig. 4.Phylogenetic tree of full-length amino acid sequence of VP2 between reference strains and Japanese field isolates of EHDV listed in Table 2. All Japanese isolates are highlighted in bold face. Bootstrap values (%) are indicated at the appropriate nodes. Scale: the number of substitutions per site.