Literature DB >> 26016883

Complete mitochondrial genome sequence of Heteropneustes fossilis obtained by paired end next generation sequencing.

Lakshman Sahoo1, Santosh Kumar2, Sofia P Das1, Siddhi Patnaik1, Amrita Bit1, Jitendra Kumar Sundaray1, P Jayasankar1, Paramananda Das1.   

Abstract

In the present study, the complete mitochondrial genome sequence of Heteropneustes fossilis is reported using massive parallel sequence technology. The complete mitogenome of H. fossilis is obtained by de novo assembly of paired end Illumina sequences using CLC Genomics Workbench version 7.0.4, which is 16,489 bp in length. It comprised of 13 protein- coding genes, 22 tRNAs, 2 rRNA genes and a putative control region along with the gene order and organization, being similar to most of vertebrates. The mitogenome in the present study has 99% similarity to the complete mitogneome sequence of H. Fossilis, as reported earlier. Phylogenetic analysis of Siluriformes depicted that Heteropneustids were closer to Clariids. The mitogenome sequence of H. fossilis contributes better understanding of population genetics, phylogenetics and evolution of Indian catfish species.

Entities:  

Keywords:  CLC Genomics Workbench; Heteropneustes fossilis; mitogenome; next generation sequencing

Mesh:

Year:  2015        PMID: 26016883     DOI: 10.3109/19401736.2015.1033710

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  1 in total

1.  Complete mitochondrial genome of threatened mahseer Tor tor (Hamilton 1822) and its phylogenetic relationship within Cyprinidae family.

Authors:  A Pavan-Kumar; Sudhanshu Raman; Prakash G Koringa; Namrata Patel; Tejas Shah; Rajeev K Singh; Gopal Krishna; C G Joshi; P Gireesh-Babu; Aparna Chaudhari
Journal:  J Genet       Date:  2016-12       Impact factor: 1.166

  1 in total

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