Literature DB >> 26014591

Innovation in metabolomics to improve personalized healthcare.

Stefano Cacciatore1, Massimo Loda1,2,3,4.   

Abstract

Metabolomics is the systemic study of all small molecules (metabolites) and their concentration as affected by pathological and physiological alterations or environmental or other factors. Metabolic alterations represent a "window" on the complex interactions between genetic expression, enzyme activity, and metabolic reactions. Techniques, including nuclear magnetic resonance spectroscopy, mass spectrometry, Fourier-transform infrared, and Raman spectroscopy, have led to significant advances in metabolomics. The field is shifting from feasibility studies to biological and clinical applications. Fields of application range from cancer biology to stem cell research and assessment of xenobiotics and drugs in tissues and single cells. Cross-validation across high-throughput platforms has allowed findings from expression profiling to be confirmed with metabolomics. Specific genetic alterations appear to drive unique metabolic programs. These, in turn, can be used as biomarkers of genetic subtypes of prostate cancer or as discovery tools for therapeutic targeting of metabolic enzymes. Thus, metabolites in blood may serve as biomarkers of tumor state, including inferring driving oncogenes. Novel applications such as these suggest that metabolic profiling may be utilized in refining personalized medicine.
© 2015 New York Academy of Sciences.

Entities:  

Keywords:  FFPE; fatty acid; metabolomics; oncogene; prostate cancer

Mesh:

Substances:

Year:  2015        PMID: 26014591      PMCID: PMC4839187          DOI: 10.1111/nyas.12775

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  44 in total

1.  On respiratory impairment in cancer cells.

Authors:  O WARBURG
Journal:  Science       Date:  1956-08-10       Impact factor: 47.728

2.  Systems biology: Metabonomics.

Authors:  Jeremy K Nicholson; John C Lindon
Journal:  Nature       Date:  2008-10-23       Impact factor: 49.962

Review 3.  Fatty acid oxidation is a dominant bioenergetic pathway in prostate cancer.

Authors:  Y Liu
Journal:  Prostate Cancer Prostatic Dis       Date:  2006-05-09       Impact factor: 5.554

Review 4.  Glucose metabolism and cancer.

Authors:  Reuben J Shaw
Journal:  Curr Opin Cell Biol       Date:  2006-10-12       Impact factor: 8.382

Review 5.  Otto Warburg's contributions to current concepts of cancer metabolism.

Authors:  Willem H Koppenol; Patricia L Bounds; Chi V Dang
Journal:  Nat Rev Cancer       Date:  2011-04-14       Impact factor: 60.716

6.  AKT1 and MYC induce distinctive metabolic fingerprints in human prostate cancer.

Authors:  Carmen Priolo; Saumyadipta Pyne; Joshua Rose; Erzsébet Ravasz Regan; Giorgia Zadra; Cornelia Photopoulos; Stefano Cacciatore; Denise Schultz; Natalia Scaglia; Jonathan McDunn; Angelo M De Marzo; Massimo Loda
Journal:  Cancer Res       Date:  2014-10-16       Impact factor: 12.701

7.  A decrease in 1H nuclear magnetic resonance spectroscopically determined citrate in human seminal fluid accompanies the development of prostate adenocarcinoma.

Authors:  Tiffany A Averna; Eric E Kline; Anthony Y Smith; Laurel O Sillerud
Journal:  J Urol       Date:  2005-02       Impact factor: 7.450

8.  Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Authors:  Arun Sreekumar; Laila M Poisson; Thekkelnaycke M Rajendiran; Amjad P Khan; Qi Cao; Jindan Yu; Bharathi Laxman; Rohit Mehra; Robert J Lonigro; Yong Li; Mukesh K Nyati; Aarif Ahsan; Shanker Kalyana-Sundaram; Bo Han; Xuhong Cao; Jaeman Byun; Gilbert S Omenn; Debashis Ghosh; Subramaniam Pennathur; Danny C Alexander; Alvin Berger; Jeffrey R Shuster; John T Wei; Sooryanarayana Varambally; Christopher Beecher; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

9.  Alteration of the lipid profile in lymphomas induced by MYC overexpression.

Authors:  Livia S Eberlin; Meital Gabay; Alice C Fan; Arvin M Gouw; Robert J Tibshirani; Dean W Felsher; Richard N Zare
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-03       Impact factor: 11.205

Review 10.  Measuring the metabolome: current analytical technologies.

Authors:  Warwick B Dunn; Nigel J C Bailey; Helen E Johnson
Journal:  Analyst       Date:  2005-03-04       Impact factor: 4.616

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  21 in total

1.  Metabolic Profiling in Formalin-Fixed and Paraffin-Embedded Prostate Cancer Tissues.

Authors:  Stefano Cacciatore; Giorgia Zadra; Clyde Bango; Kathryn L Penney; Svitlana Tyekucheva; Oscar Yanes; Massimo Loda
Journal:  Mol Cancer Res       Date:  2017-01-10       Impact factor: 5.852

2.  High-mass-resolution MALDI mass spectrometry imaging of metabolites from formalin-fixed paraffin-embedded tissue.

Authors:  Alice Ly; Achim Buck; Benjamin Balluff; Na Sun; Karin Gorzolka; Annette Feuchtinger; Klaus-Peter Janssen; Peter J K Kuppen; Cornelis J H van de Velde; Gregor Weirich; Franziska Erlmeier; Rupert Langer; Michaela Aubele; Horst Zitzelsberger; Liam McDonnell; Michaela Aichler; Axel Walch
Journal:  Nat Protoc       Date:  2016-07-14       Impact factor: 13.491

3.  Metabolome-wide association studies for agronomic traits of rice.

Authors:  Julong Wei; Aiguo Wang; Ruidong Li; Han Qu; Zhenyu Jia
Journal:  Heredity (Edinb)       Date:  2017-12-11       Impact factor: 3.821

Review 4.  Metabolic Vulnerabilities of Prostate Cancer: Diagnostic and Therapeutic Opportunities.

Authors:  Giorgia Zadra; Massimo Loda
Journal:  Cold Spring Harb Perspect Med       Date:  2018-10-01       Impact factor: 6.915

5.  Rapid immunopurification of mitochondria for metabolite profiling and absolute quantification of matrix metabolites.

Authors:  Walter W Chen; Elizaveta Freinkman; David M Sabatini
Journal:  Nat Protoc       Date:  2017-09-29       Impact factor: 13.491

6.  Absolute Quantification of Matrix Metabolites Reveals the Dynamics of Mitochondrial Metabolism.

Authors:  Walter W Chen; Elizaveta Freinkman; Tim Wang; Kıvanç Birsoy; David M Sabatini
Journal:  Cell       Date:  2016-08-25       Impact factor: 41.582

Review 7.  Novel methods in adrenal research: a metabolomics approach.

Authors:  Thomas G Papathomas; Na Sun; Vasileios Chortis; Angela E Taylor; Wiebke Arlt; Susan Richter; Graeme Eisenhofer; Gerard Ruiz-Babot; Leonardo Guasti; Axel Karl Walch
Journal:  Histochem Cell Biol       Date:  2019-02-06       Impact factor: 4.304

Review 8.  Metabolomics: Bridging the Gap between Pharmaceutical Development and Population Health.

Authors:  Vladimir Tolstikov
Journal:  Metabolites       Date:  2016-07-08

9.  Metabolomics enables precision medicine: "A White Paper, Community Perspective".

Authors:  Richard D Beger; Warwick Dunn; Michael A Schmidt; Steven S Gross; Jennifer A Kirwan; Marta Cascante; Lorraine Brennan; David S Wishart; Matej Oresic; Thomas Hankemeier; David I Broadhurst; Andrew N Lane; Karsten Suhre; Gabi Kastenmüller; Susan J Sumner; Ines Thiele; Oliver Fiehn; Rima Kaddurah-Daouk
Journal:  Metabolomics       Date:  2016-09-02       Impact factor: 4.290

Review 10.  Metabolomics and Its Application to Acute Lung Diseases.

Authors:  Kathleen A Stringer; Ryan T McKay; Alla Karnovsky; Bernadette Quémerais; Paige Lacy
Journal:  Front Immunol       Date:  2016-02-29       Impact factor: 7.561

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