Literature DB >> 26010075

"Hit-and-run": Transcription factors get caught in the act.

Varodom Charoensawan1,2,3, Claudia Martinho1, Philip A Wigge1.   

Abstract

A key challenge for understanding transcriptional regulation is being able to measure transcription factor (TF)-DNA binding events with sufficient spatial and temporal resolution; that is, when and where TFs occupy their cognate sites. A recent study by Para et al. has highlighted the dynamics underlying the activation of gene expression by a master regulator TF. This study provides concrete evidence for a long-standing hypothesis in biology, the "hit-and-run" mechanism, which was first proposed decades ago. That is, gene expression is dynamically controlled by a TF that transiently binds and activates a target gene, which might stay in a transcriptionally active state after the initial binding event has ended. Importantly, the experimental procedure introduced, TARGET, provides a useful way for identifying multiple target genes transiently bound by their regulators, which can be used in conjunction with other well-established methods to improve our understanding of transcriptional regulatory dynamics.
© 2015 WILEY Periodicals, Inc.

Entities:  

Keywords:  Arabidopsis; ChIP-seq; bZIP1; nitrogen; transcription; transcriptome

Mesh:

Substances:

Year:  2015        PMID: 26010075     DOI: 10.1002/bies.201400186

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  9 in total

1.  A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory.

Authors:  Jörn Lämke; Krzysztof Brzezinka; Simone Altmann; Isabel Bäurle
Journal:  EMBO J       Date:  2015-12-09       Impact factor: 11.598

Review 2.  Nitrate in 2020: Thirty Years from Transport to Signaling Networks.

Authors:  Elena A Vidal; José M Alvarez; Viviana Araus; Eleodoro Riveras; Matthew D Brooks; Gabriel Krouk; Sandrine Ruffel; Laurence Lejay; Nigel M Crawford; Gloria M Coruzzi; Rodrigo A Gutiérrez
Journal:  Plant Cell       Date:  2020-03-13       Impact factor: 11.277

3.  Chromatin Association of Gcn4 Is Limited by Post-translational Modifications Triggered by its DNA-Binding in Saccharomyces cerevisiae.

Authors:  Akhi Akhter; Emanuel Rosonina
Journal:  Genetics       Date:  2016-10-21       Impact factor: 4.562

4.  Natural regulatory mutations elevate the fetal globin gene via disruption of BCL11A or ZBTB7A binding.

Authors:  Gabriella E Martyn; Beeke Wienert; Lu Yang; Manan Shah; Laura J Norton; Jon Burdach; Ryo Kurita; Yukio Nakamura; Richard C M Pearson; Alister P W Funnell; Kate G R Quinlan; Merlin Crossley
Journal:  Nat Genet       Date:  2018-04-02       Impact factor: 38.330

Review 5.  Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks.

Authors:  Jose M Alvarez; Matthew D Brooks; Joseph Swift; Gloria M Coruzzi
Journal:  Annu Rev Plant Biol       Date:  2021-03-05       Impact factor: 28.310

Review 6.  Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants.

Authors:  Jörn Lämke; Isabel Bäurle
Journal:  Genome Biol       Date:  2017-06-27       Impact factor: 13.583

7.  AR-V7 exhibits non-canonical mechanisms of nuclear import and chromatin engagement in castrate-resistant prostate cancer.

Authors:  Seaho Kim; CheukMan C Au; Mohd Azrin Bin Jamalruddin; Naira Essam Abou-Ghali; Eiman Mukhtar; Luigi Portella; Adeline Berger; Daniel Worroll; Prerna Vatsa; David S Rickman; David M Nanus; Paraskevi Giannakakou
Journal:  Elife       Date:  2022-07-18       Impact factor: 8.713

8.  "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".

Authors:  Joan Doidy; Ying Li; Benjamin Neymotin; Molly B Edwards; Kranthi Varala; David Gresham; Gloria M Coruzzi
Journal:  BMC Genomics       Date:  2016-02-03       Impact factor: 3.969

9.  Convergence in LINE-1 nucleotide variations can benefit redundantly forming triplexes with lncRNA in mammalian X-chromosome inactivation.

Authors:  Yoko Matsuno; Takefumi Yamashita; Michiru Wagatsuma; Hajime Yamakage
Journal:  Mob DNA       Date:  2019-07-30
  9 in total

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