Literature DB >> 26002074

Computational modeling of cardiac optogenetics: Methodology overview & review of findings from simulations.

Patrick M Boyle1, Thomas V Karathanos2, Emilia Entcheva3, Natalia A Trayanova2.   

Abstract

Cardiac optogenetics is emerging as an exciting new potential avenue to enable spatiotemporally precise control of excitable cells and tissue in the heart with low-energy optical stimuli. This approach involves the expression of exogenous light-sensitive proteins (opsins) in target heart tissue via viral gene or cell delivery. Preliminary experiments in optogenetically-modified cells, tissue, and organisms have made great strides towards demonstrating the feasibility of basic applications, including the use of light stimuli to pace or disrupt reentrant activity. However, it remains unknown whether techniques based on this intriguing technology could be scaled up and used in humans for novel clinical applications, such as pain-free optical defibrillation or dynamic modulation of action potential shape. A key step towards answering such questions is to explore potential optogenetics-based therapies using sophisticated computer simulation tools capable of realistically representing opsin delivery and light stimulation in biophysically detailed, patient-specific models of the human heart. This review provides (1) a detailed overview of the methodological developments necessary to represent optogenetics-based solutions in existing virtual heart platforms and (2) a survey of findings that have been derived from such simulations and a critical assessment of their significance with respect to the progress of the field.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Cardiac arrhythmia; Cardiac optogenetics; Cell delivery; Light attenuation; Multiscale computational simulations; Optical stimulation; Viral gene delivery

Mesh:

Year:  2015        PMID: 26002074      PMCID: PMC4591100          DOI: 10.1016/j.compbiomed.2015.04.036

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  86 in total

1.  Computational Optogenetics: A Novel Continuum Framework for the Photoelectrochemistry of Living Systems.

Authors:  Jonathan Wong; Oscar J Abilez; Ellen Kuhl
Journal:  J Mech Phys Solids       Date:  2012-06-01       Impact factor: 5.471

2.  Image-based left ventricular shape analysis for sudden cardiac death risk stratification.

Authors:  Fijoy Vadakkumpadan; Natalia Trayanova; Katherine C Wu
Journal:  Heart Rhythm       Date:  2014-05-20       Impact factor: 6.343

Review 3.  "Beauty is a light in the heart": the transformative potential of optogenetics for clinical applications in cardiovascular medicine.

Authors:  Patrick M Boyle; Thomas V Karathanos; Natalia A Trayanova
Journal:  Trends Cardiovasc Med       Date:  2014-10-16       Impact factor: 6.677

Review 4.  Whole-heart modeling: applications to cardiac electrophysiology and electromechanics.

Authors:  Natalia A Trayanova
Journal:  Circ Res       Date:  2011-01-07       Impact factor: 17.367

Review 5.  Cardiac optogenetics.

Authors:  Emilia Entcheva
Journal:  Am J Physiol Heart Circ Physiol       Date:  2013-03-01       Impact factor: 4.733

6.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

7.  ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.

Authors:  John Y Lin; Per Magne Knutsen; Arnaud Muller; David Kleinfeld; Roger Y Tsien
Journal:  Nat Neurosci       Date:  2013-09-01       Impact factor: 24.884

8.  Channelrhodopsin2 current during the action potential: "optical AP clamp" and approximation.

Authors:  Emilia Entcheva; John C Williams
Journal:  Sci Rep       Date:  2014-07-25       Impact factor: 4.379

9.  A comprehensive multiscale framework for simulating optogenetics in the heart.

Authors:  Patrick M Boyle; John C Williams; Christina M Ambrosi; Emilia Entcheva; Natalia A Trayanova
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Simulating photon scattering effects in structurally detailed ventricular models using a Monte Carlo approach.

Authors:  Martin J Bishop; Gernot Plank
Journal:  Front Physiol       Date:  2014-09-09       Impact factor: 4.566

View more
  11 in total

Review 1.  Cardiac optogenetics: a decade of enlightenment.

Authors:  Emilia Entcheva; Matthew W Kay
Journal:  Nat Rev Cardiol       Date:  2020-12-18       Impact factor: 32.419

2.  Optogenetic defibrillation terminates ventricular arrhythmia in mouse hearts and human simulations.

Authors:  Tobias Bruegmann; Patrick M Boyle; Christoph C Vogt; Thomas V Karathanos; Hermenegild J Arevalo; Bernd K Fleischmann; Natalia A Trayanova; Philipp Sasse
Journal:  J Clin Invest       Date:  2016-09-12       Impact factor: 14.808

3.  Opsin spectral sensitivity determines the effectiveness of optogenetic termination of ventricular fibrillation in the human heart: a simulation study.

Authors:  Thomas V Karathanos; Jason D Bayer; Dafang Wang; Patrick M Boyle; Natalia A Trayanova
Journal:  J Physiol       Date:  2016-04-24       Impact factor: 5.182

Review 4.  Cardiac Optogenetics: 2018.

Authors:  Patrick M Boyle; Thomas V Karathanos; Natalia A Trayanova
Journal:  JACC Clin Electrophysiol       Date:  2018-02-01

5.  Optogenetics-enabled assessment of viral gene and cell therapy for restoration of cardiac excitability.

Authors:  Christina M Ambrosi; Patrick M Boyle; Kay Chen; Natalia A Trayanova; Emilia Entcheva
Journal:  Sci Rep       Date:  2015-12-01       Impact factor: 4.379

Review 6.  Light-based Approaches to Cardiac Arrhythmia Research: From Basic Science to Translational Applications.

Authors:  Thomas V Karathanos; Patrick M Boyle; Natalia A Trayanova
Journal:  Clin Med Insights Cardiol       Date:  2016-11-02

7.  Real-time optical manipulation of cardiac conduction in intact hearts.

Authors:  M Scardigli; C Müllenbroich; E Margoni; S Cannazzaro; C Crocini; C Ferrantini; R Coppini; P Yan; L M Loew; M Campione; L Bocchi; D Giulietti; E Cerbai; C Poggesi; G Bub; F S Pavone; L Sacconi
Journal:  J Physiol       Date:  2018-08-07       Impact factor: 5.182

8.  OptoGap is an optogenetics-enabled assay for quantification of cell-cell coupling in multicellular cardiac tissue.

Authors:  Patrick M Boyle; Jinzhu Yu; Aleksandra Klimas; John C Williams; Natalia A Trayanova; Emilia Entcheva
Journal:  Sci Rep       Date:  2021-04-29       Impact factor: 4.996

9.  Termination of re-entrant atrial tachycardia via optogenetic stimulation with optimized spatial targeting: insights from computational models.

Authors:  Patrick M Boyle; Michael J Murphy; Thomas V Karathanos; Sohail Zahid; Robert C Blake; Natalia A Trayanova
Journal:  J Physiol       Date:  2017-12-28       Impact factor: 5.182

Review 10.  Cardiac Optogenetics in Atrial Fibrillation: Current Challenges and Future Opportunities.

Authors:  Mariana Floria; Smaranda Radu; Evelina Maria Gosav; Aurelian Corneliu Moraru; Teodor Serban; Alexandru Carauleanu; Claudia Florida Costea; Anca Ouatu; Manuela Ciocoiu; Daniela Maria Tanase
Journal:  Biomed Res Int       Date:  2020-10-27       Impact factor: 3.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.