Literature DB >> 25999086

The making of Tara Oceans: funding blue skies research for our Blue Planet.

Eric Karsenti1.   

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Year:  2015        PMID: 25999086      PMCID: PMC4461403          DOI: 10.15252/msb.20156271

Source DB:  PubMed          Journal:  Mol Syst Biol        ISSN: 1744-4292            Impact factor:   11.429


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The Tara Oceans project emerged from an early romantic idea I had in 2000: organizing a sailing expedition in the wake of Darwin's voyage aboard the Beagle to popularize Biology. The original concept was mostly educational and media-oriented. Many years later, in spring 2007, with the help of a few colleagues, a scientific dimension was added to the project, which was key to start motivating funders. The long search for support and for a suitable sailing vessel was finally successful, when in fall 2007 Eric met Etienne Bourgois and agnès b., the founders of Tara Expeditions. This non-profit organization runs the 110-foot polar exploration schooner Tara since 2003, participates in scientific expeditions and promotes environmental awareness with a very efficient communication and artistic program to reach the public. Both the idea of a 3-year around-the-world expedition to study pelagic plankton organisms and the urge to raise awareness about the serious environmental issues affecting oceans appealed to the organization. The synergy that would result from combining a solid scientific concept with a vigorous communication strategy convinced both parties to engage into a long-term commitment. Together with a few adventurous colleagues, the first scientific meeting to plan the expedition was organized in Villefranche-sur-Mer in fall 2008. Inspired by the structure and functioning of EMBL, coordinators for various specialties were appointed. Specialists for the main domains of life (viruses, bacteria, archaea, protists and metazoans) were needed, as well as oceanographers, ecologists, molecular and cellular biologists, physicists and bioinformaticians, including experts on imaging, databases and sequencing. Each of the scientists involved in this early phase recruited additional colleagues in a wonderfully self-organized process. With input from the different disciplines, we determined sampling zones, organisms' size fractions to be collected, and strategies for sample storage, handling and dispatching. Using a sophisticated bar coding system, high-quality environmental data were linked to biological samples. The early discussions were passionate and robust debates ensued. At times, we wondered whether we would make it. But with the increasing awareness of the exceptional scope of this project dedicated to the study, an entire biome at a planetary scale, a sense of great excitement and uniqueness started to diffuse throughout the growing consortium. Despite having first-class seed funding in the form of the boat, securing further financial support for the planned scientific projects turned out to be a considerable challenge. By the nature of its approach and its goals, the project was outside of the usual boundaries of funded scientific research. Since the consortium mostly consisted of European researchers, we first solicited the European Commission, without success, as our project did not fit into existing calls, and preparation of new ones takes time. We also faced strong skepticism toward this ambitious project from both funders and reviewers. In particular, the interdisciplinary nature of the project proved to pose serious challenges to evaluators. For example, reviewers from the European Research Council felt that a cell biologist should not run an ocean project. A foundation representative with no biology background argued that the biological data collected would be of little use simply because it was not linked to some recent earth-science databases. These issues reflect some of the major challenges faced by funding bodies when evaluating interdisciplinary proposals. It remains a difficult task for funders to find reviewers with the suitable set of expertise and a mindset appreciative of high-risk ideas. While there is a broad consensus that interdisciplinarity is a driver for innovation and discovery, efficient instruments to fund such projects are sorely lacking. In the end, it was only the collective enthusiasm and commitment of the individual participants that made Tara Oceans possible. Remarkably, the scientists involved in the project were so excited by the adventure that they were willing to contribute their own funding. A seemingly heteroclite number of bodies were approached: EMBL, the French Center for Atomic Energy (CEA), CNRS, the Council of Bretagne, the French Ministry of Research and all other institutions where consortium members were employed. Tara Expeditions furthermore negotiated private deals with various companies and organizations such as Foundation Veolia and agnès b. herself. All these manageable amounts turned out to be an efficient funding model that distributes the risk and burden among various partners, with little overhead, and is thus highly scalable. With this system, we eventually managed to secure funding for the expedition itself. Financial support for the analysis phase of the project and for the coordination of the large consortium was then partially covered by a more classical French funding program (“Investissements d'avenir” and its project OCEANOMICS, http://www.oceanomics.eu/). The 3-year expedition itself (including boat maintenance and crew) costs about 6 million Euros and the sequencing, initial imaging and bioinformatics analysis about 10 million Euros (excluding the salaries of scientists provided by institutional funding). In the initial analysis phase that started in 2011 (Sunagawa et al, 2015a), several meetings per year helped coordinating the various efforts and Tara Oceans progress was subjected to review by an international Scientific Advisory Board (http://oceans.taraexpeditions.org/en/jdb/scientific-advisory-board/) to ensure the highest scientific quality. Fifteen years after what was initially a wild dream, a treasure trove of incredibly exciting data (Fig1) is revealed to the scientific community (Brum et al, 2015; Lima-Mendez et al, 2015; Sunagawa et al, 2015b; de Vargas et al, 2015; Villar et al, 2015) and, thanks to an intensive communication campaign, the Tara Oceans expedition has had a wide public impact worldwide (Box 1). We have demonstrated that a scientific dream off the beaten tracks can become a reality, albeit requiring a tremendous amount of motivation, collective awareness, creativity, dedication and willpower. Yet, Tara Oceans might serve as a model for future large-scale projects that can grow with great efficiency if they are started with a small and solid foundation that is extended, bottom-up, into a high-impact international effort by the collective contributions of the project's participants.
Figure 1

An unsuspected diversity of eukaryotic unicellular organisms (protists) was revealed by Tara Oceans

Ribosomal DNA metabarcoding analysis and confocal laser scanning microscopy were applied to preserved plankton samples to understand the fundamentally symbiotic nature of these complex cells which often contain more genes than us humans. From upper left to down right: a diatom (Chaetoceros sp.) with its nucleus (blue) and chloroplasts (red); an acantharian (Lithoptera sp.), with skeleton structure in strontium sulfate and haptophyte endosymbiotic algae (red); a dinoflagellate infected by the parasitoid alveolate Amoebophrya sp.; a heterotrophic dinoflagellate (Dinophysis sp.) harboring kleptoplasts (red). Modified from Figure 4 in de Vargas et al (2015). Copyright: ©S.Colin, EPEP/SBRoscoff, CNRS & ALMF EMBL.

An unsuspected diversity of eukaryotic unicellular organisms (protists) was revealed by Tara Oceans Ribosomal DNA metabarcoding analysis and confocal laser scanning microscopy were applied to preserved plankton samples to understand the fundamentally symbiotic nature of these complex cells which often contain more genes than us humans. From upper left to down right: a diatom (Chaetoceros sp.) with its nucleus (blue) and chloroplasts (red); an acantharian (Lithoptera sp.), with skeleton structure in strontium sulfate and haptophyte endosymbiotic algae (red); a dinoflagellate infected by the parasitoid alveolate Amoebophrya sp.; a heterotrophic dinoflagellate (Dinophysis sp.) harboring kleptoplasts (red). Modified from Figure 4 in de Vargas et al (2015). Copyright: ©S.Colin, EPEP/SBRoscoff, CNRS & ALMF EMBL. Tara Oceans was not only a scientific expedition but also an exceptional human adventure. Beyond data collection and analysis, a chief objective of the expedition was to raise awareness about the fragility of marine ecosystems. Having both scientists and artists on board for long periods revived the tradition of legendary expeditions, such as Darwin's Beagle, and the Challenger. Indeed, more than 250 biologists, oceanographers, sailors, journalists, writers and artists from 40 countries took turns aboard the schooner Tara. Scientists and crew members met with local communities in 30 different countries during stopovers in 50 ports of call. Communicating with local people, authorities, educators and NGOs was a major task for all participants, and more than 10,000 school children were received aboard Tara for visits. Several large-scale media events and scientific conferences took place across the globe, including a stopover in New York organized as part of the mission to reach out to politicians at the United Nations, which culminated with the visit from the Secretary General of the United Nations, Mr. Ban Ki-moon on board Tara. Further general public and educational materials are available through a multitude of channels: The Tara Oceans and Tara Oceans Polar Circle Web site, including its newsletters, media library and educational material. Social media: Facebook, Twitter. Science Web sites: EMBL Tara Oceans Science, Plankton Chronicles. YouTube shows: Tara Oceans, Tara Oceans Polar Circle Part 1, Part 2. Books: Tara Oceans, chroniques d'une expédition scientifique”, E Karsenti, D Diméo (Actes Sud, 2012). “Journal de bord d'une scientifique”, S Nicaud (Le Pommier, 2012). “Voyage autour du pôle à bord de Tara”, V Hilaire (Hachette, 2014). “Plancton – aux origines du vivant” (Ulmer 2013), C Sardet. “Plankton – wonders of a drifting world” (Univ. Chicago Press, 2015), C Sardet.
  6 in total

1.  Ocean plankton. Determinants of community structure in the global plankton interactome.

Authors:  Gipsi Lima-Mendez; Karoline Faust; Nicolas Henry; Johan Decelle; Sébastien Colin; Fabrizio Carcillo; Samuel Chaffron; J Cesar Ignacio-Espinosa; Simon Roux; Flora Vincent; Lucie Bittner; Youssef Darzi; Jun Wang; Stéphane Audic; Léo Berline; Gianluca Bontempi; Ana M Cabello; Laurent Coppola; Francisco M Cornejo-Castillo; Francesco d'Ovidio; Luc De Meester; Isabel Ferrera; Marie-José Garet-Delmas; Lionel Guidi; Elena Lara; Stéphane Pesant; Marta Royo-Llonch; Guillem Salazar; Pablo Sánchez; Marta Sebastian; Caroline Souffreau; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Gabriel Gorsky; Fabrice Not; Hiroyuki Ogata; Sabrina Speich; Lars Stemmann; Jean Weissenbach; Patrick Wincker; Silvia G Acinas; Shinichi Sunagawa; Peer Bork; Matthew B Sullivan; Eric Karsenti; Chris Bowler; Colomban de Vargas; Jeroen Raes
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

2.  Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport.

Authors:  Emilie Villar; Gregory K Farrant; Michael Follows; Laurence Garczarek; Sabrina Speich; Stéphane Audic; Lucie Bittner; Bruno Blanke; Jennifer R Brum; Christophe Brunet; Raffaella Casotti; Alison Chase; John R Dolan; Fabrizio d'Ortenzio; Jean-Pierre Gattuso; Nicolas Grima; Lionel Guidi; Christopher N Hill; Oliver Jahn; Jean-Louis Jamet; Hervé Le Goff; Cyrille Lepoivre; Shruti Malviya; Eric Pelletier; Jean-Baptiste Romagnan; Simon Roux; Sébastien Santini; Eleonora Scalco; Sarah M Schwenck; Atsuko Tanaka; Pierre Testor; Thomas Vannier; Flora Vincent; Adriana Zingone; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Silvia G Acinas; Peer Bork; Emmanuel Boss; Colomban de Vargas; Gabriel Gorsky; Hiroyuki Ogata; Stéphane Pesant; Matthew B Sullivan; Shinichi Sunagawa; Patrick Wincker; Eric Karsenti; Chris Bowler; Fabrice Not; Pascal Hingamp; Daniele Iudicone
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

3.  Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.

Authors:  Colomban de Vargas; Stéphane Audic; Nicolas Henry; Johan Decelle; Frédéric Mahé; Ramiro Logares; Enrique Lara; Cédric Berney; Noan Le Bescot; Ian Probert; Margaux Carmichael; Julie Poulain; Sarah Romac; Sébastien Colin; Jean-Marc Aury; Lucie Bittner; Samuel Chaffron; Micah Dunthorn; Stefan Engelen; Olga Flegontova; Lionel Guidi; Aleš Horák; Olivier Jaillon; Gipsi Lima-Mendez; Julius Lukeš; Shruti Malviya; Raphael Morard; Matthieu Mulot; Eleonora Scalco; Raffaele Siano; Flora Vincent; Adriana Zingone; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Silvia G Acinas; Peer Bork; Chris Bowler; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Jeroen Raes; Michael E Sieracki; Sabrina Speich; Lars Stemmann; Shinichi Sunagawa; Jean Weissenbach; Patrick Wincker; Eric Karsenti
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

4.  Ocean plankton. Structure and function of the global ocean microbiome.

Authors:  Shinichi Sunagawa; Luis Pedro Coelho; Samuel Chaffron; Jens Roat Kultima; Karine Labadie; Guillem Salazar; Bardya Djahanschiri; Georg Zeller; Daniel R Mende; Adriana Alberti; Francisco M Cornejo-Castillo; Paul I Costea; Corinne Cruaud; Francesco d'Ovidio; Stefan Engelen; Isabel Ferrera; Josep M Gasol; Lionel Guidi; Falk Hildebrand; Florian Kokoszka; Cyrille Lepoivre; Gipsi Lima-Mendez; Julie Poulain; Bonnie T Poulos; Marta Royo-Llonch; Hugo Sarmento; Sara Vieira-Silva; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Chris Bowler; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Sabrina Speich; Lars Stemmann; Matthew B Sullivan; Jean Weissenbach; Patrick Wincker; Eric Karsenti; Jeroen Raes; Silvia G Acinas; Peer Bork
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

5.  Ocean plankton. Patterns and ecological drivers of ocean viral communities.

Authors:  Jennifer R Brum; J Cesar Ignacio-Espinoza; Simon Roux; Guilhem Doulcier; Silvia G Acinas; Adriana Alberti; Samuel Chaffron; Corinne Cruaud; Colomban de Vargas; Josep M Gasol; Gabriel Gorsky; Ann C Gregory; Lionel Guidi; Pascal Hingamp; Daniele Iudicone; Fabrice Not; Hiroyuki Ogata; Stéphane Pesant; Bonnie T Poulos; Sarah M Schwenck; Sabrina Speich; Celine Dimier; Stefanie Kandels-Lewis; Marc Picheral; Sarah Searson; Peer Bork; Chris Bowler; Shinichi Sunagawa; Patrick Wincker; Eric Karsenti; Matthew B Sullivan
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

6.  Computational eco-systems biology in Tara Oceans: translating data into knowledge.

Authors:  Shinichi Sunagawa; Eric Karsenti; Chris Bowler; Peer Bork
Journal:  Mol Syst Biol       Date:  2015-05-21       Impact factor: 11.429

  6 in total
  2 in total

1.  Computational eco-systems biology in Tara Oceans: translating data into knowledge.

Authors:  Shinichi Sunagawa; Eric Karsenti; Chris Bowler; Peer Bork
Journal:  Mol Syst Biol       Date:  2015-05-21       Impact factor: 11.429

2.  Genetic and phylogenetic analysis of dissimilatory iodate-reducing bacteria identifies potential niches across the world's oceans.

Authors:  Victor Reyes-Umana; Zachary Henning; Kristina Lee; Tyler P Barnum; John D Coates
Journal:  ISME J       Date:  2021-07-02       Impact factor: 10.302

  2 in total

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