Literature DB >> 25996868

Genetic variation, simplicity, and evolutionary constraints for function-valued traits.

Joel G Kingsolver1, Nancy Heckman, Jonathan Zhang, Patrick A Carter, Jennifer L Knies, John R Stinchcombe, Karin Meyer.   

Abstract

Understanding the patterns of genetic variation and constraint for continuous reaction norms, growth trajectories, and other function-valued traits is challenging. We describe and illustrate a recent analytical method, simple basis analysis (SBA), that uses the genetic variance-covariance (G) matrix to identify "simple" directions of genetic variation and genetic constraints that have straightforward biological interpretations. We discuss the parallels between the eigenvectors (principal components) identified by principal components analysis (PCA) and the simple basis (SB) vectors identified by SBA. We apply these methods to estimated G matrices obtained from 10 studies of thermal performance curves and growth curves. Our results suggest that variation in overall size across all ages represented most of the genetic variance in growth curves. In contrast, variation in overall performance across all temperatures represented less than one-third of the genetic variance in thermal performance curves in all cases, and genetic trade-offs between performance at higher versus lower temperatures were often important. The analyses also identify potential genetic constraints on patterns of early and later growth in growth curves. We suggest that SBA can be a useful complement or alternative to PCA for identifying biologically interpretable directions of genetic variation and constraint in function-valued traits.

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Year:  2015        PMID: 25996868     DOI: 10.1086/681083

Source DB:  PubMed          Journal:  Am Nat        ISSN: 0003-0147            Impact factor:   3.926


  4 in total

1.  Accounting for Sampling Error in Genetic Eigenvalues Using Random Matrix Theory.

Authors:  Jacqueline L Sztepanacz; Mark W Blows
Journal:  Genetics       Date:  2017-05-05       Impact factor: 4.562

2.  Genetic Decoupling of Thermal Hardiness across Metamorphosis in Drosophila melanogaster.

Authors:  Philip J Freda; Jackson T Alex; Theodore J Morgan; Gregory J Ragland
Journal:  Integr Comp Biol       Date:  2017-11-01       Impact factor: 3.326

3.  Genetic variation for upper thermal tolerance diminishes within and between populations with increasing acclimation temperature in Atlantic salmon.

Authors:  Paul V Debes; Monica F Solberg; Ivar H Matre; Lise Dyrhovden; Kevin A Glover
Journal:  Heredity (Edinb)       Date:  2021-08-26       Impact factor: 3.821

4.  Diversity in nonlinear responses to soil moisture shapes evolutionary constraints in Brachypodium.

Authors:  J Grey Monroe; Haoran Cai; David L Des Marais
Journal:  G3 (Bethesda)       Date:  2021-12-08       Impact factor: 3.154

  4 in total

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