Literature DB >> 25996254

Initial O₂ Insertion Step of the Tryptophan Dioxygenase Reaction Proposed by a Heme-Modification Study.

Ryu Makino1, Eiji Obayashi2, Hiroshi Hori3, Tetsutaro Iizuka4, Keisuke Mashima1, Yoshitsugu Shiro4, Yuzuru Ishimura5.   

Abstract

L-Tryptophan 2,3-dioxygenase (TDO) is a protoheme-containing enzyme that catalyzes the production of N-formylkynurenine by inserting O₂ into the pyrrole ring of L-tryptophan. Although a ferrous-oxy form (Fe²⁺-O₂) has been established to be an obligate intermediate in the reaction, details of the ring opening reaction remain elusive. In this study, the O₂ insertion reaction catalyzed by Pseudomonas TDO (PaTDO) was examined using a heme-modification approach, which allowed us to draw a quantitative correlation between the inductive electronic effects of the heme substituents and the substituent-induced changes in the functional behaviors of the ferrous-oxy form. We succeeded in preparing reconstituted PaTDO with synthetic hemes, which were different with respect to the inductive electron-withdrawing nature of the heme substituents at positions 2 and 4. An increase in the electron-withdrawing power of the heme substituents elevated the redox potential of reconstituted PaTDO, showing that the stronger the electron-withdrawing ability of the heme substituents, the lower the electron density on the heme iron. The decrease in the electron density of the heme iron resulted in a higher frequency shift of the C-O stretch of the heme-bound CO and enhanced the dissociation of O₂ from the ferrous-oxy intermediate. This result was interpreted as being due to weaker π back-donation from the heme iron to the bound CO or O₂. More importantly, the reaction rates of the ferrous-oxy intermediate to oxidize L-Trp were increased with the electron-withdrawing ability of the heme substituents, implying that the more electron-deficient ferrous-oxy heme is favored for the PaTDO-catalyzed oxygenation. On the basis of these results, we propose that the initial step of the dioxygen activation by PaTDO is a direct electrophilic addition of the heme-bound O₂ to the indole ring of L-Trp.

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Year:  2015        PMID: 25996254     DOI: 10.1021/acs.biochem.5b00048

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Oxidation of an indole substrate by porphyrin iron(iii) superoxide: relevance to indoleamine and tryptophan 2,3-dioxygenases.

Authors:  Jireh Joy D Sacramento; David P Goldberg
Journal:  Chem Commun (Camb)       Date:  2020-03-10       Impact factor: 6.222

2.  Stepwise O-Atom Transfer in Heme-Based Tryptophan Dioxygenase: Role of Substrate Ammonium in Epoxide Ring Opening.

Authors:  Inchul Shin; Brett R Ambler; Daniel Wherritt; Wendell P Griffith; Amanda C Maldonado; Ryan A Altman; Aimin Liu
Journal:  J Am Chem Soc       Date:  2018-03-15       Impact factor: 15.419

3.  Kinetic and Spectroscopic Characterization of the Catalytic Ternary Complex of Tryptophan 2,3-Dioxygenase.

Authors:  Jiafeng Geng; Andrew C Weitz; Kednerlin Dornevil; Michael P Hendrich; Aimin Liu
Journal:  Biochemistry       Date:  2020-07-23       Impact factor: 3.162

4.  Characterization of the structural determinants of the ubiquitin-dependent proteasomal degradation of human hepatic tryptophan 2,3-dioxygenase.

Authors:  Yi Liu; Sung-Mi Kim; YongQiang Wang; Shay Karkashon; Ariel Lewis-Ballester; Syun-Ru Yeh; Maria Almira Correia
Journal:  Biochem J       Date:  2021-05-28       Impact factor: 3.857

5.  Substrate Oxidation by Indoleamine 2,3-Dioxygenase: EVIDENCE FOR A COMMON REACTION MECHANISM.

Authors:  Elizabeth S Booth; Jaswir Basran; Michael Lee; Sandeep Handa; Emma L Raven
Journal:  J Biol Chem       Date:  2015-10-28       Impact factor: 5.157

6.  Molecular basis for catalysis and substrate-mediated cellular stabilization of human tryptophan 2,3-dioxygenase.

Authors:  Ariel Lewis-Ballester; Farhad Forouhar; Sung-Mi Kim; Scott Lew; YongQiang Wang; Shay Karkashon; Jayaraman Seetharaman; Dipanwita Batabyal; Bing-Yu Chiang; Munif Hussain; Maria Almira Correia; Syun-Ru Yeh; Liang Tong
Journal:  Sci Rep       Date:  2016-10-20       Impact factor: 4.379

Review 7.  A short history of heme dioxygenases: rise, fall and rise again.

Authors:  Emma L Raven
Journal:  J Biol Inorg Chem       Date:  2016-12-01       Impact factor: 3.358

  7 in total

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