Literature DB >> 25995947

Crystal structure of (E)-2-({[2-(1,3-dioxan-2-yl)phen-yl]imino}-meth-yl)phenol.

Zhengyi Li1, Song Shi1, Kun Zhou1, Liang Chen1, Xiaoqiang Sun1.   

Abstract

The title compound, C17H17NO3, prepared by the condensation reaction of n class="Chemical">2-(1,3-dioxan-2-yl)aniline and salicyl-aldehyde, has an E conformation about the C=N bond. The six-membered O-heterocycle adopts a chair conformation, with the bond to the aromatic ring located at its equatorial position. The dihedral angle between the aromatic rings is 36.54 (9)°. There is an intra-molecular N-H⋯O hydrogen bond forming an S(6) ring motif. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming chains along the a-axis direction. Within the chains, there are C-H⋯π inter-actions involving adjacent mol-ecules.

Entities:  

Keywords:  N—H⋯O hydrogen bonds; Schiff base; acetal; crystal structure; intra­molecular hydrogen bonding

Year:  2015        PMID: 25995947      PMCID: PMC4420126          DOI: 10.1107/S2056989015008051

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general background to acetals, see: Cismaş et al. (2005 ▸); Sun et al. (2010 ▸). For n class="Chemical">Schiff bases of salicyl­aldehyde having important applications in biological and pharmacological chemistry, see: Gupta & Sutar (2008 ▸); Jiménez-Sánchez et al. (2013 ▸). For further background to related Schiff base ligands and their various properties, see: Arod et al. (2005 ▸); Chatziefthimiou et al. (2006 ▸).

Experimental

Crystal data

C17H17NO3 M = 283.32 Orthorhombic, a = 8.4873 (18) Å b = 10.821 (2) Å c = 16.232 (3) Å V = 1490.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.26 × 0.24 × 0.22 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.978, T max = 0.981 9005 measured reflections 3123 independent reflections 2494 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.097 S = 1.00 3123 reflections 190 parameters 1 restraint H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, Global. DOI: 10.1107/S2056989015008051/su5122sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008051/su5122Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015008051/su5122Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015008051/su5122fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 30% probability level. The intra­molecular O—H⋯N hydrogen bond is shown as a dashed line (see Table 1 for details). Click here for additional data file. c . DOI: 10.1107/S2056989015008051/su5122fig2.tif A partial view of the crystal packing of the title compound, view along the c axis. Hydrogen bonds are shown as dashed lines (see Table 1 for details). CCDC reference: 1061272 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H17NO3F(000) = 600
Mr = 283.32Dx = 1.262 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 3792 reflections
a = 8.4873 (18) Åθ = 2.3–26.4°
b = 10.821 (2) ŵ = 0.09 mm1
c = 16.232 (3) ÅT = 296 K
V = 1490.8 (5) Å3Block, yellow
Z = 40.26 × 0.24 × 0.22 mm
Bruker APEXII CCD area-detector diffractometer3123 independent reflections
Radiation source: fine-focus sealed tube2494 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
phi and ω scansθmax = 27.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→11
Tmin = 0.978, Tmax = 0.981k = −13→13
9005 measured reflectionsl = −17→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0565P)2 + 0.020P] where P = (Fo2 + 2Fc2)/3
3123 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.15 e Å3
1 restraintΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.36289 (19)0.02306 (15)0.41243 (12)0.0456 (4)
C20.4402 (2)0.0087 (2)0.48668 (13)0.0594 (5)
H20.4360−0.06680.51400.071*
C30.5234 (3)0.1054 (2)0.52064 (14)0.0666 (6)
H30.57490.09450.57070.080*
C40.5314 (2)0.2185 (2)0.48125 (14)0.0645 (5)
H40.58720.28350.50470.077*
C50.4561 (2)0.23357 (17)0.40717 (14)0.0567 (5)
H50.46160.30960.38070.068*
C60.37108 (19)0.13744 (15)0.37051 (12)0.0442 (4)
C70.2987 (2)0.15509 (15)0.29062 (12)0.0455 (4)
H70.30590.23240.26590.055*
C80.16825 (19)0.09047 (14)0.17144 (11)0.0409 (4)
C90.2536 (2)0.16144 (17)0.11485 (13)0.0507 (4)
H90.34940.19620.13030.061*
C100.1966 (2)0.18018 (19)0.03623 (13)0.0572 (5)
H100.25330.2288−0.00050.069*
C110.0567 (2)0.12752 (18)0.01177 (12)0.0549 (5)
H110.01850.1407−0.04120.066*
C12−0.0266 (2)0.05486 (16)0.06659 (12)0.0482 (4)
H12−0.12080.01880.04990.058*
C130.02793 (18)0.03466 (13)0.14640 (10)0.0390 (3)
C14−0.06859 (19)−0.03996 (13)0.20547 (11)0.0415 (4)
H140.0019−0.08550.24240.050*
C15−0.2564 (3)−0.0245 (2)0.31050 (16)0.0704 (6)
H15A−0.32230.03340.34040.084*
H15B−0.1891−0.06640.34990.084*
C16−0.3585 (2)−0.1176 (2)0.26691 (17)0.0710 (6)
H16A−0.4128−0.16850.30710.085*
H16B−0.4371−0.07520.23400.085*
C17−0.2593 (3)−0.1966 (2)0.21304 (19)0.0797 (7)
H17A−0.1945−0.25000.24700.096*
H17B−0.3267−0.24860.17940.096*
N10.22509 (16)0.06900 (12)0.25250 (9)0.0427 (3)
O10.28135 (16)−0.07360 (11)0.38050 (9)0.0606 (4)
H10.2368−0.05450.33540.091*
O2−0.16132 (15)0.04108 (10)0.25196 (9)0.0536 (3)
O3−0.16055 (18)−0.12428 (12)0.16085 (10)0.0670 (4)
U11U22U33U12U13U23
C10.0412 (9)0.0476 (8)0.0479 (9)−0.0025 (7)0.0094 (8)0.0012 (7)
C20.0610 (11)0.0654 (11)0.0517 (11)−0.0032 (10)0.0004 (9)0.0117 (10)
C30.0688 (13)0.0826 (14)0.0484 (11)−0.0044 (11)−0.0071 (10)0.0028 (11)
C40.0687 (12)0.0662 (11)0.0586 (13)−0.0109 (10)−0.0074 (10)−0.0122 (10)
C50.0586 (11)0.0474 (9)0.0642 (12)−0.0064 (8)−0.0016 (10)−0.0024 (9)
C60.0400 (8)0.0445 (8)0.0480 (9)0.0015 (7)0.0043 (8)−0.0020 (7)
C70.0459 (9)0.0382 (7)0.0525 (10)−0.0014 (7)0.0030 (8)0.0037 (7)
C80.0410 (8)0.0364 (7)0.0452 (9)−0.0001 (6)0.0038 (7)0.0011 (7)
C90.0460 (9)0.0530 (9)0.0531 (11)−0.0096 (8)0.0056 (8)0.0053 (8)
C100.0583 (11)0.0591 (10)0.0542 (11)−0.0029 (9)0.0128 (9)0.0105 (8)
C110.0559 (11)0.0643 (11)0.0446 (10)0.0081 (9)0.0046 (8)0.0013 (9)
C120.0428 (9)0.0521 (9)0.0496 (10)0.0037 (7)0.0009 (8)−0.0063 (8)
C130.0376 (8)0.0335 (7)0.0460 (9)0.0031 (6)0.0042 (7)−0.0044 (6)
C140.0361 (8)0.0364 (7)0.0519 (9)0.0016 (6)0.0014 (7)0.0004 (7)
C150.0669 (13)0.0810 (14)0.0632 (14)−0.0131 (12)0.0203 (11)−0.0020 (12)
C160.0464 (10)0.0842 (13)0.0824 (16)−0.0132 (10)0.0135 (11)0.0118 (13)
C170.0778 (15)0.0588 (11)0.103 (2)−0.0284 (11)0.0238 (14)−0.0027 (13)
N10.0381 (7)0.0429 (6)0.0470 (8)−0.0035 (5)0.0011 (7)0.0035 (6)
O10.0697 (8)0.0510 (6)0.0612 (8)−0.0186 (6)−0.0049 (7)0.0099 (7)
O20.0570 (7)0.0468 (6)0.0570 (7)−0.0036 (5)0.0189 (6)−0.0069 (6)
O30.0723 (9)0.0561 (7)0.0726 (10)−0.0275 (7)0.0215 (8)−0.0191 (7)
C1—O11.357 (2)C10—H100.9300
C1—C21.381 (3)C11—C121.382 (3)
C1—C61.414 (2)C11—H110.9300
C2—C31.378 (3)C12—C131.393 (3)
C2—H20.9300C12—H120.9300
C3—C41.382 (3)C13—C141.497 (2)
C3—H30.9300C14—O21.399 (2)
C4—C51.372 (3)C14—O31.402 (2)
C4—H40.9300C14—H140.9800
C5—C61.399 (3)C15—O21.435 (2)
C5—H50.9300C15—C161.505 (3)
C6—C71.448 (3)C15—H15A0.9700
C7—N11.281 (2)C15—H15B0.9700
C7—H70.9300C16—C171.485 (3)
C8—C131.396 (2)C16—H16A0.9700
C8—C91.399 (2)C16—H16B0.9700
C8—N11.420 (2)C17—O31.426 (3)
C9—C101.380 (3)C17—H17A0.9700
C9—H90.9300C17—H17B0.9700
C10—C111.375 (3)O1—H10.8501
O1—C1—C2119.27 (16)C11—C12—H12119.4
O1—C1—C6121.05 (17)C13—C12—H12119.4
C2—C1—C6119.67 (17)C12—C13—C8119.10 (15)
C3—C2—C1120.50 (19)C12—C13—C14119.90 (14)
C3—C2—H2119.8C8—C13—C14120.91 (15)
C1—C2—H2119.8O2—C14—O3111.92 (14)
C2—C3—C4120.8 (2)O2—C14—C13108.36 (11)
C2—C3—H3119.6O3—C14—C13108.94 (15)
C4—C3—H3119.6O2—C14—H14109.2
C5—C4—C3119.21 (19)O3—C14—H14109.2
C5—C4—H4120.4C13—C14—H14109.2
C3—C4—H4120.4O2—C15—C16110.1 (2)
C4—C5—C6121.66 (19)O2—C15—H15A109.6
C4—C5—H5119.2C16—C15—H15A109.6
C6—C5—H5119.2O2—C15—H15B109.6
C5—C6—C1118.13 (17)C16—C15—H15B109.6
C5—C6—C7120.13 (16)H15A—C15—H15B108.2
C1—C6—C7121.71 (15)C17—C16—C15109.61 (17)
N1—C7—C6122.95 (15)C17—C16—H16A109.7
N1—C7—H7118.5C15—C16—H16A109.7
C6—C7—H7118.5C17—C16—H16B109.7
C13—C8—C9119.22 (16)C15—C16—H16B109.7
C13—C8—N1119.25 (14)H16A—C16—H16B108.2
C9—C8—N1121.46 (15)O3—C17—C16111.56 (16)
C10—C9—C8120.40 (18)O3—C17—H17A109.3
C10—C9—H9119.8C16—C17—H17A109.3
C8—C9—H9119.8O3—C17—H17B109.3
C11—C10—C9120.59 (18)C16—C17—H17B109.3
C11—C10—H10119.7H17A—C17—H17B108.0
C9—C10—H10119.7C7—N1—C8119.61 (14)
C10—C11—C12119.44 (19)C1—O1—H1111.6
C10—C11—H11120.3C14—O2—C15111.33 (13)
C12—C11—H11120.3C14—O3—C17112.17 (17)
C11—C12—C13121.21 (17)
O1—C1—C2—C3−179.79 (19)C9—C8—C13—C12−2.4 (2)
C6—C1—C2—C30.8 (3)N1—C8—C13—C12−179.32 (15)
C1—C2—C3—C40.0 (3)C9—C8—C13—C14−178.78 (15)
C2—C3—C4—C5−0.4 (3)N1—C8—C13—C144.3 (2)
C3—C4—C5—C60.1 (3)C12—C13—C14—O2−94.14 (18)
C4—C5—C6—C10.7 (3)C8—C13—C14—O282.23 (17)
C4—C5—C6—C7−177.36 (18)C12—C13—C14—O327.85 (19)
O1—C1—C6—C5179.50 (15)C8—C13—C14—O3−155.78 (15)
C2—C1—C6—C5−1.1 (2)O2—C15—C16—C1752.4 (3)
O1—C1—C6—C7−2.5 (3)C15—C16—C17—O3−51.1 (3)
C2—C1—C6—C7176.88 (16)C6—C7—N1—C8−174.91 (15)
C5—C6—C7—N1177.01 (16)C13—C8—N1—C7−146.14 (15)
C1—C6—C7—N1−1.0 (3)C9—C8—N1—C737.0 (2)
C13—C8—C9—C102.6 (3)O3—C14—O2—C1560.3 (2)
N1—C8—C9—C10179.47 (18)C13—C14—O2—C15−179.59 (16)
C8—C9—C10—C11−1.3 (3)C16—C15—O2—C14−57.2 (2)
C9—C10—C11—C12−0.3 (3)O2—C14—O3—C17−58.6 (2)
C10—C11—C12—C130.5 (3)C13—C14—O3—C17−178.37 (16)
C11—C12—C13—C80.9 (2)C16—C17—O3—C1454.4 (3)
C11—C12—C13—C14177.32 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.851.902.632 (2)144
C7—H7···O2i0.932.483.364 (2)160
C15—H15A···Cg1ii0.972.773.694 (3)160
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C1C6 ring.

DHA DHHA D A DHA
O1H1N10.851.902.632(2)144
C7H7O2i 0.932.483.364(2)160
C15H15A Cg1ii 0.972.773.694(3)160

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The alpha2-polymorph of salicylideneaniline.

Authors:  Frédéric Arod; Manuel Gardon; Philip Pattison; Gervais Chapuis
Journal:  Acta Crystallogr C       Date:  2005-04-23       Impact factor: 1.172

3.  Keto forms of salicylaldehyde Schiff bases: structural and theoretical aspects.

Authors:  Spyros D Chatziefthimiou; Yannis G Lazarou; Eugene Hadjoudis; Tereza Dziembowska; Irene M Mavridis
Journal:  J Phys Chem B       Date:  2006-11-30       Impact factor: 2.991

  3 in total

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