Literature DB >> 25995942

Crystal structure of 4-bromo-2-[(E)-N-(2,2,6,6-tetra-methyl-piperidin-4-yl)carboximido-yl]phenol dihydrate.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Antar A Abdelhamid4, Mustafa R Albayati5.   

Abstract

In the title hydrate, C16H23BrN2O·2H2O, the organic mol-ecule features a strong intra-molecular O-H⋯N hydrogen bond. The piperidine ring, in addition, adopts a chair conformation with the exocyclic C-N bond in an equatorial orientation. The water molecules of crystallization are disordered (each over two sets of sites with half occupancy. In the crystal, they associate into corrugated (100) sheets of (H2O)4 tetra-mers linked by O-H⋯O hydrogen bonds. The organic mol-ecules, in turn, are arranged at both sides of these sheets, linked by water-piperidine O-H⋯N hydrogen bonds.

Entities:  

Keywords:  Schiff bases; crystal structure; hydrogen bonding; piperidines

Year:  2015        PMID: 25995942      PMCID: PMC4420100          DOI: 10.1107/S2056989015007471

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For various biological applications of piperidine-containing compounds, see: Sánchez-Sancho & Herrandón (1998 ▸); Nithiya et al. (2011 ▸); Adger et al. (1996 ▸); Kozikowski et al. (1998 ▸); Brau et al. (2000 ▸).

Experimental

Crystal data

C16H23BrN2O·2H2O M = 375.30 Monoclinic, a = 39.6126 (7) Å b = 6.0497 (1) Å c = 14.8673 (3) Å β = 98.889 (1)° V = 3520.07 (11) Å3 Z = 8 Cu Kα radiation μ = 3.30 mm−1 T = 150 K 0.34 × 0.09 × 0.08 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: numerical (SADABS; Bruker, 2014 ▸) T min = 0.54, T max = 0.77 12901 measured reflections 3428 independent reflections 3113 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.077 S = 1.10 3428 reflections 204 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.67 e Å−3

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015007471/bg2553sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007471/bg2553Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015007471/bg2553fig1.tif The the asymmetric unit showing the intra- and inter­molecular O—H⋯N hydrogen bonds as dotted lines. Only one set of the disordered hydrogen atoms is shown. Click here for additional data file. b . DOI: 10.1107/S2056989015007471/bg2553fig2.tif Packing viewed down the b axis with inter­molecular O—H⋯N and O—H⋯O hydrogen bonds shown, respectively, as purple and red dotted lines. Only one set of the disordered hydrogen atoms is shown. Click here for additional data file. . DOI: 10.1107/S2056989015007471/bg2553fig3.tif A portion of the layer of lattice water mol­ecules. Only one set of the disordered hydrogen atoms is shown. CCDC reference: 1059897 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H23BrN2O·2H2OF(000) = 1568
Mr = 375.30Dx = 1.416 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54178 Å
a = 39.6126 (7) ÅCell parameters from 9702 reflections
b = 6.0497 (1) Åθ = 6.0–72.1°
c = 14.8673 (3) ŵ = 3.30 mm1
β = 98.889 (1)°T = 150 K
V = 3520.07 (11) Å3Column, pale yellow
Z = 80.34 × 0.09 × 0.08 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer3428 independent reflections
Radiation source: INCOATEC IµS micro–focus source3113 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.025
Detector resolution: 10.4167 pixels mm-1θmax = 72.2°, θmin = 6.0°
ω scansh = −48→45
Absorption correction: numerical (SADABS; Bruker, 2014)k = −7→6
Tmin = 0.54, Tmax = 0.77l = −18→15
12901 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: mixed
wR(F2) = 0.077H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0323P)2 + 4.9527P] where P = (Fo2 + 2Fc2)/3
3428 reflections(Δ/σ)max = 0.002
204 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.67 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.98 Å) while those attached to nitrogen and oxygen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å and O—H = 0.84 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms. Each lattice water molecule is disordered over two sites with the oxygen and one hydrogen in common. Based on peak heights for the disordered H atoms, the two sites for these atoms were judged to be equally occupied.
xyzUiso*/UeqOcc. (<1)
Br10.82893 (2)0.47282 (5)0.33146 (2)0.04137 (10)
O10.69904 (4)0.0570 (2)0.41569 (10)0.0300 (3)
H1A0.68350.15270.40800.056 (9)*
N10.66823 (4)0.4316 (3)0.36510 (11)0.0236 (3)
N20.56827 (4)0.6877 (2)0.37146 (10)0.0191 (3)
H2A0.55860.56380.39120.023*
C10.72738 (5)0.3664 (3)0.35750 (12)0.0224 (4)
C20.72757 (5)0.1514 (3)0.39411 (12)0.0251 (4)
C30.75833 (6)0.0340 (3)0.40982 (13)0.0301 (4)
H30.7587−0.11110.43440.036*
C40.78818 (5)0.1262 (4)0.39007 (13)0.0335 (5)
H40.80890.04500.40080.040*
C50.78768 (5)0.3385 (4)0.35440 (13)0.0288 (4)
C60.75773 (5)0.4580 (3)0.33731 (12)0.0249 (4)
H60.75770.60210.31190.030*
C70.69657 (5)0.5031 (3)0.34611 (12)0.0215 (4)
H70.69770.64970.32390.026*
C80.63930 (4)0.5860 (3)0.35583 (12)0.0210 (4)
H80.64650.73260.33430.025*
C90.62799 (5)0.6125 (3)0.44904 (12)0.0215 (4)
H9A0.64690.67950.49170.026*
H9B0.62330.46460.47280.026*
C100.59592 (4)0.7571 (3)0.44580 (12)0.0200 (4)
C110.57716 (4)0.6334 (3)0.28012 (11)0.0196 (3)
C120.60997 (5)0.4941 (3)0.28757 (12)0.0213 (4)
H12A0.60490.34180.30580.026*
H12B0.61730.48620.22690.026*
C130.60480 (5)1.0012 (3)0.43633 (14)0.0249 (4)
H13A0.61701.02000.38440.037*
H13B0.61931.05120.49200.037*
H13C0.58371.08890.42650.037*
C140.58145 (5)0.7278 (3)0.53433 (12)0.0269 (4)
H14A0.56170.82580.53420.040*
H14B0.59900.76500.58600.040*
H14C0.57430.57400.53970.040*
C150.58037 (5)0.8434 (3)0.22423 (12)0.0247 (4)
H15A0.56060.93940.22720.037*
H15B0.58110.80310.16070.037*
H15C0.60140.92180.24910.037*
C160.54701 (5)0.4976 (3)0.23218 (13)0.0252 (4)
H16A0.54350.36840.26940.038*
H16B0.55190.44850.17270.038*
H16C0.52630.58890.22370.038*
O20.51008 (4)0.9736 (2)0.35246 (11)0.0331 (3)0.5
H2B0.52780.89540.35620.040*0.5
H2C0.50381.00050.29700.040*0.5
O30.51664 (4)0.2904 (3)0.49776 (11)0.0399 (4)0.5
H3A0.51270.21580.54270.048*0.5
H3B0.51240.20810.45190.048*0.5
O2A0.51008 (4)0.9736 (2)0.35246 (11)0.0331 (3)0.5
H2BA0.52780.89540.35620.040*0.5
H2D0.51051.07620.39070.040*0.5
O3A0.51664 (4)0.2904 (3)0.49776 (11)0.0399 (4)0.5
H3AA0.51270.21580.54270.048*0.5
H3C0.50690.41310.50000.048*0.5
U11U22U33U12U13U23
Br10.01904 (12)0.06914 (19)0.03582 (14)−0.00163 (10)0.00390 (9)−0.01717 (11)
O10.0346 (8)0.0241 (7)0.0318 (7)0.0020 (6)0.0068 (6)0.0023 (6)
N10.0216 (8)0.0231 (8)0.0259 (8)0.0039 (6)0.0034 (6)0.0019 (6)
N20.0191 (7)0.0207 (7)0.0184 (7)−0.0018 (6)0.0054 (5)−0.0001 (6)
C10.0228 (9)0.0258 (9)0.0183 (8)0.0036 (7)0.0017 (6)−0.0033 (7)
C20.0311 (10)0.0250 (9)0.0186 (8)0.0045 (8)0.0015 (7)−0.0035 (7)
C30.0393 (11)0.0286 (10)0.0215 (9)0.0126 (9)0.0013 (8)−0.0015 (8)
C40.0306 (10)0.0446 (12)0.0234 (10)0.0181 (9)−0.0020 (8)−0.0067 (9)
C50.0206 (9)0.0421 (12)0.0227 (9)0.0039 (8)0.0003 (7)−0.0109 (8)
C60.0228 (9)0.0308 (10)0.0207 (9)0.0024 (8)0.0023 (7)−0.0047 (7)
C70.0227 (9)0.0216 (9)0.0202 (8)0.0033 (7)0.0028 (7)0.0020 (7)
C80.0188 (8)0.0189 (8)0.0257 (9)0.0025 (7)0.0044 (7)0.0041 (7)
C90.0226 (9)0.0200 (8)0.0211 (9)0.0010 (7)0.0014 (7)0.0017 (7)
C100.0213 (8)0.0206 (9)0.0181 (8)−0.0001 (7)0.0034 (6)0.0003 (7)
C110.0188 (8)0.0224 (9)0.0182 (8)−0.0002 (7)0.0046 (6)−0.0001 (7)
C120.0227 (9)0.0211 (9)0.0206 (8)0.0023 (7)0.0051 (7)0.0007 (7)
C130.0262 (10)0.0188 (9)0.0288 (10)−0.0001 (7)0.0018 (7)−0.0007 (7)
C140.0313 (10)0.0302 (10)0.0201 (9)−0.0013 (8)0.0070 (7)−0.0011 (8)
C150.0235 (9)0.0289 (10)0.0226 (9)0.0030 (7)0.0066 (7)0.0055 (8)
C160.0220 (9)0.0305 (10)0.0232 (9)−0.0017 (7)0.0041 (7)−0.0048 (7)
O20.0281 (7)0.0337 (8)0.0376 (8)0.0058 (6)0.0050 (6)−0.0057 (6)
O30.0444 (9)0.0318 (8)0.0450 (9)−0.0004 (7)0.0113 (7)−0.0064 (7)
O2A0.0281 (7)0.0337 (8)0.0376 (8)0.0058 (6)0.0050 (6)−0.0057 (6)
O3A0.0444 (9)0.0318 (8)0.0450 (9)−0.0004 (7)0.0113 (7)−0.0064 (7)
Br1—C51.902 (2)C10—C131.530 (2)
O1—C21.348 (2)C11—C161.532 (2)
O1—H1A0.8400C11—C151.534 (2)
N1—C71.275 (2)C11—C121.538 (2)
N1—C81.468 (2)C12—H12A0.9900
N2—C101.491 (2)C12—H12B0.9900
N2—C111.491 (2)C13—H13A0.9800
N2—H2A0.9099C13—H13B0.9800
C1—C61.398 (3)C13—H13C0.9800
C1—C21.409 (3)C14—H14A0.9800
C1—C71.463 (2)C14—H14B0.9800
C2—C31.399 (3)C14—H14C0.9800
C3—C41.379 (3)C15—H15A0.9800
C3—H30.9500C15—H15B0.9800
C4—C51.388 (3)C15—H15C0.9800
C4—H40.9500C16—H16A0.9800
C5—C61.379 (3)C16—H16B0.9800
C6—H60.9500C16—H16C0.9800
C7—H70.9500O2—H2B0.8400
C8—C121.525 (3)O2—H2C0.8400
C8—C91.529 (2)O3—H3A0.8399
C8—H81.0000O3—H3B0.8400
C9—C101.537 (2)O2A—H2BA0.8400
C9—H9A0.9900O2A—H2D0.8400
C9—H9B0.9900O3A—H3AA0.8399
C10—C141.525 (2)O3A—H3C0.8401
C2—O1—H1A107.4C14—C10—C9109.03 (15)
C7—N1—C8117.69 (15)C13—C10—C9110.57 (15)
C10—N2—C11119.17 (13)N2—C11—C16105.38 (14)
C10—N2—H2A106.8N2—C11—C15111.20 (14)
C11—N2—H2A106.4C16—C11—C15108.43 (15)
C6—C1—C2119.71 (17)N2—C11—C12111.77 (14)
C6—C1—C7118.73 (17)C16—C11—C12109.21 (15)
C2—C1—C7121.42 (17)C15—C11—C12110.66 (14)
O1—C2—C3119.07 (18)C8—C12—C11113.38 (14)
O1—C2—C1121.87 (17)C8—C12—H12A108.9
C3—C2—C1119.06 (19)C11—C12—H12A108.9
C4—C3—C2120.81 (19)C8—C12—H12B108.9
C4—C3—H3119.6C11—C12—H12B108.9
C2—C3—H3119.6H12A—C12—H12B107.7
C3—C4—C5119.57 (18)C10—C13—H13A109.5
C3—C4—H4120.2C10—C13—H13B109.5
C5—C4—H4120.2H13A—C13—H13B109.5
C6—C5—C4121.09 (19)C10—C13—H13C109.5
C6—C5—Br1118.76 (17)H13A—C13—H13C109.5
C4—C5—Br1120.12 (15)H13B—C13—H13C109.5
C5—C6—C1119.75 (19)C10—C14—H14A109.5
C5—C6—H6120.1C10—C14—H14B109.5
C1—C6—H6120.1H14A—C14—H14B109.5
N1—C7—C1122.01 (17)C10—C14—H14C109.5
N1—C7—H7119.0H14A—C14—H14C109.5
C1—C7—H7119.0H14B—C14—H14C109.5
N1—C8—C12109.52 (15)C11—C15—H15A109.5
N1—C8—C9108.38 (14)C11—C15—H15B109.5
C12—C8—C9109.97 (14)H15A—C15—H15B109.5
N1—C8—H8109.6C11—C15—H15C109.5
C12—C8—H8109.6H15A—C15—H15C109.5
C9—C8—H8109.6H15B—C15—H15C109.5
C8—C9—C10112.81 (14)C11—C16—H16A109.5
C8—C9—H9A109.0C11—C16—H16B109.5
C10—C9—H9A109.0H16A—C16—H16B109.5
C8—C9—H9B109.0C11—C16—H16C109.5
C10—C9—H9B109.0H16A—C16—H16C109.5
H9A—C9—H9B107.8H16B—C16—H16C109.5
N2—C10—C14106.03 (14)H2B—O2—H2C106.9
N2—C10—C13110.90 (14)H3A—O3—H3B106.7
C14—C10—C13108.29 (15)H2BA—O2A—H2D116.2
N2—C10—C9111.84 (14)H3AA—O3A—H3C107.5
C6—C1—C2—O1179.19 (17)C7—N1—C8—C9−119.20 (18)
C7—C1—C2—O13.7 (3)N1—C8—C9—C10−175.48 (14)
C6—C1—C2—C30.2 (3)C12—C8—C9—C10−55.78 (19)
C7—C1—C2—C3−175.29 (17)C11—N2—C10—C14−162.17 (15)
O1—C2—C3—C4−178.91 (17)C11—N2—C10—C1380.49 (19)
C1—C2—C3—C40.1 (3)C11—N2—C10—C9−43.4 (2)
C2—C3—C4—C50.2 (3)C8—C9—C10—N249.0 (2)
C3—C4—C5—C6−0.8 (3)C8—C9—C10—C14165.96 (15)
C3—C4—C5—Br1177.42 (15)C8—C9—C10—C13−75.08 (19)
C4—C5—C6—C11.1 (3)C10—N2—C11—C16161.25 (15)
Br1—C5—C6—C1−177.13 (13)C10—N2—C11—C15−81.47 (18)
C2—C1—C6—C5−0.8 (3)C10—N2—C11—C1242.7 (2)
C7—C1—C6—C5174.83 (16)N1—C8—C12—C11174.37 (14)
C8—N1—C7—C1176.84 (16)C9—C8—C12—C1155.37 (19)
C6—C1—C7—N1−178.48 (17)N2—C11—C12—C8−48.0 (2)
C2—C1—C7—N1−2.9 (3)C16—C11—C12—C8−164.17 (15)
C7—N1—C8—C12120.82 (18)C15—C11—C12—C876.55 (18)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N10.841.872.628 (2)149
O2—H2B···N20.842.022.861 (2)175
O3—H3A···O2i0.842.243.059 (2)167
O3—H3B···O2ii0.842.042.869 (2)168
O2A—H2BA···N20.842.022.861 (2)175
O2A—H2D···O3Aiii0.842.042.869 (2)170
O3A—H3AA···O2Ai0.842.243.059 (2)167
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1AN10.841.872.628(2)149
O2H2BN20.842.022.861(2)175
O3H3AO2i 0.842.243.059(2)167
O3H3BO2ii 0.842.042.869(2)168
O2AH2BAN20.842.022.861(2)175
O2AH2DO3A iii 0.842.042.869(2)170
O3AH3AAO2A i 0.842.243.059(2)167

Symmetry codes: (i) ; (ii) ; (iii) .

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