| Literature DB >> 25995942 |
Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Antar A Abdelhamid4, Mustafa R Albayati5.
Abstract
In the title hydrate, C16H23BrN2O·2H2O, the organic mol-ecule features a strong intra-molecular O-H⋯N hydrogen bond. The piperidine ring, in addition, adopts a chair conformation with the exocyclic C-N bond in an equatorial orientation. The water molecules of crystallization are disordered (each over two sets of sites with half occupancy. In the crystal, they associate into corrugated (100) sheets of (H2O)4 tetra-mers linked by O-H⋯O hydrogen bonds. The organic mol-ecules, in turn, are arranged at both sides of these sheets, linked by water-piperidine O-H⋯N hydrogen bonds.Entities:
Keywords: Schiff bases; crystal structure; hydrogen bonding; piperidines
Year: 2015 PMID: 25995942 PMCID: PMC4420100 DOI: 10.1107/S2056989015007471
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C16H23BrN2O·2H2O | |
| Monoclinic, | Cu |
| Cell parameters from 9702 reflections | |
| θ = 6.0–72.1° | |
| µ = 3.30 mm−1 | |
| β = 98.889 (1)° | |
| Column, pale yellow | |
| 0.34 × 0.09 × 0.08 mm |
| Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 3428 independent reflections |
| Radiation source: INCOATEC IµS micro–focus source | 3113 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 72.2°, θmin = 6.0° |
| ω scans | |
| Absorption correction: numerical ( | |
| 12901 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H-atom parameters constrained | |
| 3428 reflections | (Δ/σ)max = 0.002 |
| 204 parameters | Δρmax = 0.56 e Å−3 |
| 0 restraints | Δρmin = −0.67 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Br1 | 0.82893 (2) | 0.47282 (5) | 0.33146 (2) | 0.04137 (10) | |
| O1 | 0.69904 (4) | 0.0570 (2) | 0.41569 (10) | 0.0300 (3) | |
| H1A | 0.6835 | 0.1527 | 0.4080 | 0.056 (9)* | |
| N1 | 0.66823 (4) | 0.4316 (3) | 0.36510 (11) | 0.0236 (3) | |
| N2 | 0.56827 (4) | 0.6877 (2) | 0.37146 (10) | 0.0191 (3) | |
| H2A | 0.5586 | 0.5638 | 0.3912 | 0.023* | |
| C1 | 0.72738 (5) | 0.3664 (3) | 0.35750 (12) | 0.0224 (4) | |
| C2 | 0.72757 (5) | 0.1514 (3) | 0.39411 (12) | 0.0251 (4) | |
| C3 | 0.75833 (6) | 0.0340 (3) | 0.40982 (13) | 0.0301 (4) | |
| H3 | 0.7587 | −0.1111 | 0.4344 | 0.036* | |
| C4 | 0.78818 (5) | 0.1262 (4) | 0.39007 (13) | 0.0335 (5) | |
| H4 | 0.8089 | 0.0450 | 0.4008 | 0.040* | |
| C5 | 0.78768 (5) | 0.3385 (4) | 0.35440 (13) | 0.0288 (4) | |
| C6 | 0.75773 (5) | 0.4580 (3) | 0.33731 (12) | 0.0249 (4) | |
| H6 | 0.7577 | 0.6021 | 0.3119 | 0.030* | |
| C7 | 0.69657 (5) | 0.5031 (3) | 0.34611 (12) | 0.0215 (4) | |
| H7 | 0.6977 | 0.6497 | 0.3239 | 0.026* | |
| C8 | 0.63930 (4) | 0.5860 (3) | 0.35583 (12) | 0.0210 (4) | |
| H8 | 0.6465 | 0.7326 | 0.3343 | 0.025* | |
| C9 | 0.62799 (5) | 0.6125 (3) | 0.44904 (12) | 0.0215 (4) | |
| H9A | 0.6469 | 0.6795 | 0.4917 | 0.026* | |
| H9B | 0.6233 | 0.4646 | 0.4728 | 0.026* | |
| C10 | 0.59592 (4) | 0.7571 (3) | 0.44580 (12) | 0.0200 (4) | |
| C11 | 0.57716 (4) | 0.6334 (3) | 0.28012 (11) | 0.0196 (3) | |
| C12 | 0.60997 (5) | 0.4941 (3) | 0.28757 (12) | 0.0213 (4) | |
| H12A | 0.6049 | 0.3418 | 0.3058 | 0.026* | |
| H12B | 0.6173 | 0.4862 | 0.2269 | 0.026* | |
| C13 | 0.60480 (5) | 1.0012 (3) | 0.43633 (14) | 0.0249 (4) | |
| H13A | 0.6170 | 1.0200 | 0.3844 | 0.037* | |
| H13B | 0.6193 | 1.0512 | 0.4920 | 0.037* | |
| H13C | 0.5837 | 1.0889 | 0.4265 | 0.037* | |
| C14 | 0.58145 (5) | 0.7278 (3) | 0.53433 (12) | 0.0269 (4) | |
| H14A | 0.5617 | 0.8258 | 0.5342 | 0.040* | |
| H14B | 0.5990 | 0.7650 | 0.5860 | 0.040* | |
| H14C | 0.5743 | 0.5740 | 0.5397 | 0.040* | |
| C15 | 0.58037 (5) | 0.8434 (3) | 0.22423 (12) | 0.0247 (4) | |
| H15A | 0.5606 | 0.9394 | 0.2272 | 0.037* | |
| H15B | 0.5811 | 0.8031 | 0.1607 | 0.037* | |
| H15C | 0.6014 | 0.9218 | 0.2491 | 0.037* | |
| C16 | 0.54701 (5) | 0.4976 (3) | 0.23218 (13) | 0.0252 (4) | |
| H16A | 0.5435 | 0.3684 | 0.2694 | 0.038* | |
| H16B | 0.5519 | 0.4485 | 0.1727 | 0.038* | |
| H16C | 0.5263 | 0.5889 | 0.2237 | 0.038* | |
| O2 | 0.51008 (4) | 0.9736 (2) | 0.35246 (11) | 0.0331 (3) | 0.5 |
| H2B | 0.5278 | 0.8954 | 0.3562 | 0.040* | 0.5 |
| H2C | 0.5038 | 1.0005 | 0.2970 | 0.040* | 0.5 |
| O3 | 0.51664 (4) | 0.2904 (3) | 0.49776 (11) | 0.0399 (4) | 0.5 |
| H3A | 0.5127 | 0.2158 | 0.5427 | 0.048* | 0.5 |
| H3B | 0.5124 | 0.2081 | 0.4519 | 0.048* | 0.5 |
| O2A | 0.51008 (4) | 0.9736 (2) | 0.35246 (11) | 0.0331 (3) | 0.5 |
| H2BA | 0.5278 | 0.8954 | 0.3562 | 0.040* | 0.5 |
| H2D | 0.5105 | 1.0762 | 0.3907 | 0.040* | 0.5 |
| O3A | 0.51664 (4) | 0.2904 (3) | 0.49776 (11) | 0.0399 (4) | 0.5 |
| H3AA | 0.5127 | 0.2158 | 0.5427 | 0.048* | 0.5 |
| H3C | 0.5069 | 0.4131 | 0.5000 | 0.048* | 0.5 |
| Br1 | 0.01904 (12) | 0.06914 (19) | 0.03582 (14) | −0.00163 (10) | 0.00390 (9) | −0.01717 (11) |
| O1 | 0.0346 (8) | 0.0241 (7) | 0.0318 (7) | 0.0020 (6) | 0.0068 (6) | 0.0023 (6) |
| N1 | 0.0216 (8) | 0.0231 (8) | 0.0259 (8) | 0.0039 (6) | 0.0034 (6) | 0.0019 (6) |
| N2 | 0.0191 (7) | 0.0207 (7) | 0.0184 (7) | −0.0018 (6) | 0.0054 (5) | −0.0001 (6) |
| C1 | 0.0228 (9) | 0.0258 (9) | 0.0183 (8) | 0.0036 (7) | 0.0017 (6) | −0.0033 (7) |
| C2 | 0.0311 (10) | 0.0250 (9) | 0.0186 (8) | 0.0045 (8) | 0.0015 (7) | −0.0035 (7) |
| C3 | 0.0393 (11) | 0.0286 (10) | 0.0215 (9) | 0.0126 (9) | 0.0013 (8) | −0.0015 (8) |
| C4 | 0.0306 (10) | 0.0446 (12) | 0.0234 (10) | 0.0181 (9) | −0.0020 (8) | −0.0067 (9) |
| C5 | 0.0206 (9) | 0.0421 (12) | 0.0227 (9) | 0.0039 (8) | 0.0003 (7) | −0.0109 (8) |
| C6 | 0.0228 (9) | 0.0308 (10) | 0.0207 (9) | 0.0024 (8) | 0.0023 (7) | −0.0047 (7) |
| C7 | 0.0227 (9) | 0.0216 (9) | 0.0202 (8) | 0.0033 (7) | 0.0028 (7) | 0.0020 (7) |
| C8 | 0.0188 (8) | 0.0189 (8) | 0.0257 (9) | 0.0025 (7) | 0.0044 (7) | 0.0041 (7) |
| C9 | 0.0226 (9) | 0.0200 (8) | 0.0211 (9) | 0.0010 (7) | 0.0014 (7) | 0.0017 (7) |
| C10 | 0.0213 (8) | 0.0206 (9) | 0.0181 (8) | −0.0001 (7) | 0.0034 (6) | 0.0003 (7) |
| C11 | 0.0188 (8) | 0.0224 (9) | 0.0182 (8) | −0.0002 (7) | 0.0046 (6) | −0.0001 (7) |
| C12 | 0.0227 (9) | 0.0211 (9) | 0.0206 (8) | 0.0023 (7) | 0.0051 (7) | 0.0007 (7) |
| C13 | 0.0262 (10) | 0.0188 (9) | 0.0288 (10) | −0.0001 (7) | 0.0018 (7) | −0.0007 (7) |
| C14 | 0.0313 (10) | 0.0302 (10) | 0.0201 (9) | −0.0013 (8) | 0.0070 (7) | −0.0011 (8) |
| C15 | 0.0235 (9) | 0.0289 (10) | 0.0226 (9) | 0.0030 (7) | 0.0066 (7) | 0.0055 (8) |
| C16 | 0.0220 (9) | 0.0305 (10) | 0.0232 (9) | −0.0017 (7) | 0.0041 (7) | −0.0048 (7) |
| O2 | 0.0281 (7) | 0.0337 (8) | 0.0376 (8) | 0.0058 (6) | 0.0050 (6) | −0.0057 (6) |
| O3 | 0.0444 (9) | 0.0318 (8) | 0.0450 (9) | −0.0004 (7) | 0.0113 (7) | −0.0064 (7) |
| O2A | 0.0281 (7) | 0.0337 (8) | 0.0376 (8) | 0.0058 (6) | 0.0050 (6) | −0.0057 (6) |
| O3A | 0.0444 (9) | 0.0318 (8) | 0.0450 (9) | −0.0004 (7) | 0.0113 (7) | −0.0064 (7) |
| Br1—C5 | 1.902 (2) | C10—C13 | 1.530 (2) |
| O1—C2 | 1.348 (2) | C11—C16 | 1.532 (2) |
| O1—H1A | 0.8400 | C11—C15 | 1.534 (2) |
| N1—C7 | 1.275 (2) | C11—C12 | 1.538 (2) |
| N1—C8 | 1.468 (2) | C12—H12A | 0.9900 |
| N2—C10 | 1.491 (2) | C12—H12B | 0.9900 |
| N2—C11 | 1.491 (2) | C13—H13A | 0.9800 |
| N2—H2A | 0.9099 | C13—H13B | 0.9800 |
| C1—C6 | 1.398 (3) | C13—H13C | 0.9800 |
| C1—C2 | 1.409 (3) | C14—H14A | 0.9800 |
| C1—C7 | 1.463 (2) | C14—H14B | 0.9800 |
| C2—C3 | 1.399 (3) | C14—H14C | 0.9800 |
| C3—C4 | 1.379 (3) | C15—H15A | 0.9800 |
| C3—H3 | 0.9500 | C15—H15B | 0.9800 |
| C4—C5 | 1.388 (3) | C15—H15C | 0.9800 |
| C4—H4 | 0.9500 | C16—H16A | 0.9800 |
| C5—C6 | 1.379 (3) | C16—H16B | 0.9800 |
| C6—H6 | 0.9500 | C16—H16C | 0.9800 |
| C7—H7 | 0.9500 | O2—H2B | 0.8400 |
| C8—C12 | 1.525 (3) | O2—H2C | 0.8400 |
| C8—C9 | 1.529 (2) | O3—H3A | 0.8399 |
| C8—H8 | 1.0000 | O3—H3B | 0.8400 |
| C9—C10 | 1.537 (2) | O2A—H2BA | 0.8400 |
| C9—H9A | 0.9900 | O2A—H2D | 0.8400 |
| C9—H9B | 0.9900 | O3A—H3AA | 0.8399 |
| C10—C14 | 1.525 (2) | O3A—H3C | 0.8401 |
| C2—O1—H1A | 107.4 | C14—C10—C9 | 109.03 (15) |
| C7—N1—C8 | 117.69 (15) | C13—C10—C9 | 110.57 (15) |
| C10—N2—C11 | 119.17 (13) | N2—C11—C16 | 105.38 (14) |
| C10—N2—H2A | 106.8 | N2—C11—C15 | 111.20 (14) |
| C11—N2—H2A | 106.4 | C16—C11—C15 | 108.43 (15) |
| C6—C1—C2 | 119.71 (17) | N2—C11—C12 | 111.77 (14) |
| C6—C1—C7 | 118.73 (17) | C16—C11—C12 | 109.21 (15) |
| C2—C1—C7 | 121.42 (17) | C15—C11—C12 | 110.66 (14) |
| O1—C2—C3 | 119.07 (18) | C8—C12—C11 | 113.38 (14) |
| O1—C2—C1 | 121.87 (17) | C8—C12—H12A | 108.9 |
| C3—C2—C1 | 119.06 (19) | C11—C12—H12A | 108.9 |
| C4—C3—C2 | 120.81 (19) | C8—C12—H12B | 108.9 |
| C4—C3—H3 | 119.6 | C11—C12—H12B | 108.9 |
| C2—C3—H3 | 119.6 | H12A—C12—H12B | 107.7 |
| C3—C4—C5 | 119.57 (18) | C10—C13—H13A | 109.5 |
| C3—C4—H4 | 120.2 | C10—C13—H13B | 109.5 |
| C5—C4—H4 | 120.2 | H13A—C13—H13B | 109.5 |
| C6—C5—C4 | 121.09 (19) | C10—C13—H13C | 109.5 |
| C6—C5—Br1 | 118.76 (17) | H13A—C13—H13C | 109.5 |
| C4—C5—Br1 | 120.12 (15) | H13B—C13—H13C | 109.5 |
| C5—C6—C1 | 119.75 (19) | C10—C14—H14A | 109.5 |
| C5—C6—H6 | 120.1 | C10—C14—H14B | 109.5 |
| C1—C6—H6 | 120.1 | H14A—C14—H14B | 109.5 |
| N1—C7—C1 | 122.01 (17) | C10—C14—H14C | 109.5 |
| N1—C7—H7 | 119.0 | H14A—C14—H14C | 109.5 |
| C1—C7—H7 | 119.0 | H14B—C14—H14C | 109.5 |
| N1—C8—C12 | 109.52 (15) | C11—C15—H15A | 109.5 |
| N1—C8—C9 | 108.38 (14) | C11—C15—H15B | 109.5 |
| C12—C8—C9 | 109.97 (14) | H15A—C15—H15B | 109.5 |
| N1—C8—H8 | 109.6 | C11—C15—H15C | 109.5 |
| C12—C8—H8 | 109.6 | H15A—C15—H15C | 109.5 |
| C9—C8—H8 | 109.6 | H15B—C15—H15C | 109.5 |
| C8—C9—C10 | 112.81 (14) | C11—C16—H16A | 109.5 |
| C8—C9—H9A | 109.0 | C11—C16—H16B | 109.5 |
| C10—C9—H9A | 109.0 | H16A—C16—H16B | 109.5 |
| C8—C9—H9B | 109.0 | C11—C16—H16C | 109.5 |
| C10—C9—H9B | 109.0 | H16A—C16—H16C | 109.5 |
| H9A—C9—H9B | 107.8 | H16B—C16—H16C | 109.5 |
| N2—C10—C14 | 106.03 (14) | H2B—O2—H2C | 106.9 |
| N2—C10—C13 | 110.90 (14) | H3A—O3—H3B | 106.7 |
| C14—C10—C13 | 108.29 (15) | H2BA—O2A—H2D | 116.2 |
| N2—C10—C9 | 111.84 (14) | H3AA—O3A—H3C | 107.5 |
| C6—C1—C2—O1 | 179.19 (17) | C7—N1—C8—C9 | −119.20 (18) |
| C7—C1—C2—O1 | 3.7 (3) | N1—C8—C9—C10 | −175.48 (14) |
| C6—C1—C2—C3 | 0.2 (3) | C12—C8—C9—C10 | −55.78 (19) |
| C7—C1—C2—C3 | −175.29 (17) | C11—N2—C10—C14 | −162.17 (15) |
| O1—C2—C3—C4 | −178.91 (17) | C11—N2—C10—C13 | 80.49 (19) |
| C1—C2—C3—C4 | 0.1 (3) | C11—N2—C10—C9 | −43.4 (2) |
| C2—C3—C4—C5 | 0.2 (3) | C8—C9—C10—N2 | 49.0 (2) |
| C3—C4—C5—C6 | −0.8 (3) | C8—C9—C10—C14 | 165.96 (15) |
| C3—C4—C5—Br1 | 177.42 (15) | C8—C9—C10—C13 | −75.08 (19) |
| C4—C5—C6—C1 | 1.1 (3) | C10—N2—C11—C16 | 161.25 (15) |
| Br1—C5—C6—C1 | −177.13 (13) | C10—N2—C11—C15 | −81.47 (18) |
| C2—C1—C6—C5 | −0.8 (3) | C10—N2—C11—C12 | 42.7 (2) |
| C7—C1—C6—C5 | 174.83 (16) | N1—C8—C12—C11 | 174.37 (14) |
| C8—N1—C7—C1 | 176.84 (16) | C9—C8—C12—C11 | 55.37 (19) |
| C6—C1—C7—N1 | −178.48 (17) | N2—C11—C12—C8 | −48.0 (2) |
| C2—C1—C7—N1 | −2.9 (3) | C16—C11—C12—C8 | −164.17 (15) |
| C7—N1—C8—C12 | 120.82 (18) | C15—C11—C12—C8 | 76.55 (18) |
| H··· | ||||
| O1—H1 | 0.84 | 1.87 | 2.628 (2) | 149 |
| O2—H2 | 0.84 | 2.02 | 2.861 (2) | 175 |
| O3—H3 | 0.84 | 2.24 | 3.059 (2) | 167 |
| O3—H3 | 0.84 | 2.04 | 2.869 (2) | 168 |
| O2 | 0.84 | 2.02 | 2.861 (2) | 175 |
| O2 | 0.84 | 2.04 | 2.869 (2) | 170 |
| O3 | 0.84 | 2.24 | 3.059 (2) | 167 |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O1H1 | 0.84 | 1.87 | 2.628(2) | 149 |
| O2H2 | 0.84 | 2.02 | 2.861(2) | 175 |
| O3H3 | 0.84 | 2.24 | 3.059(2) | 167 |
| O3H3 | 0.84 | 2.04 | 2.869(2) | 168 |
| O2 | 0.84 | 2.02 | 2.861(2) | 175 |
| O2 | 0.84 | 2.04 | 2.869(2) | 170 |
| O3 | 0.84 | 2.24 | 3.059(2) | 167 |
Symmetry codes: (i) ; (ii) ; (iii) .