Literature DB >> 25995934

Crystal structure of 2-(11-oxo-10H,11H-indeno-[1,2-b]chromen-10-yl)-2,3-di-hydro-1H-indene-1,3-dione.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Antanr A Abdelhamid4, Mustafa R Albayati5.   

Abstract

In the title mol-ecule, C25H14O4, the fused-ring system consisting of four rings is approximately planar, with a dihedral angle of 9.62 (5)° between the planes of the indene ring system and the benzene ring. The di-hydro-indene-1,3-dione unit makes a dihedral angle of 63.50 (2)° with the mean plane of the fused-ring system. A weak C-H⋯O inter-action organizes the mol-ecules into a helical chain along the b axis. In addition, there is a π-π stacking inter-action between the five-membered rings of adjacent fused-ring systems, with a centroid-centroid distance of 3.666 (1) Å.

Entities:  

Keywords:  chromenes; coumarins; crystal structure; hydrogen bonding; indandiones; π–π stacking

Year:  2015        PMID: 25995934      PMCID: PMC4420077          DOI: 10.1107/S2056989015007495

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For synthesis and biological properties of chromene scaffolds, see: RamaGanesh et al. (2010 ▸); O’Kenedy & Thornes (1997 ▸); Zabradnik (1992 ▸). For the bioactivity of fused chromenes, see: Bargagna et al. (1992 ▸); Ermili et al. (1979 ▸).

Experimental

Crystal data

C25H14O4 M = 378.36 Monoclinic, a = 8.7409 (2) Å b = 14.4740 (3) Å c = 14.2774 (3) Å β = 101.141 (1)° V = 1772.28 (7) Å3 Z = 4 Cu Kα radiation μ = 0.78 mm−1 T = 150 K 0.23 × 0.22 × 0.11 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.86, T max = 0.92 28946 measured reflections 3495 independent reflections 3189 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.090 S = 1.06 3495 reflections 262 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXL2014. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015007495/is5397sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007495/is5397Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015007495/is5397Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015007495/is5397fig1.tif The mol­ecular structure of the title compound with labeling scheme and 50% probability ellipsoids. Click here for additional data file. . DOI: 10.1107/S2056989015007495/is5397fig2.tif A packing diagram of the title compound, showing a chain structure formed by C—H⋯O inter­actions (dashed lines). CCDC reference: 1059989 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H14O4F(000) = 784
Mr = 378.36Dx = 1.418 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
a = 8.7409 (2) ÅCell parameters from 9790 reflections
b = 14.4740 (3) Åθ = 3.1–72.3°
c = 14.2774 (3) ŵ = 0.78 mm1
β = 101.141 (1)°T = 150 K
V = 1772.28 (7) Å3Block, orange
Z = 40.23 × 0.22 × 0.11 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer3495 independent reflections
Radiation source: INCOATEC IµS micro–focus source3189 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.030
Detector resolution: 10.4167 pixels mm-1θmax = 72.4°, θmin = 4.4°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −17→17
Tmin = 0.86, Tmax = 0.92l = −17→17
28946 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0457P)2 + 0.5107P] where P = (Fo2 + 2Fc2)/3
3495 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms were placed in calculated positions (C—H = 0.95 - 1.00 Å) and included as riding contributions with isotropic displacement parameters 1.2 times those of the attached carbon atoms.
xyzUiso*/Ueq
O10.47506 (10)0.32965 (6)0.40020 (6)0.0302 (2)
O20.16356 (11)0.59782 (6)0.38392 (6)0.0352 (2)
O30.08695 (12)0.33852 (7)0.24206 (6)0.0440 (3)
O40.27958 (11)0.57260 (6)0.06450 (6)0.0343 (2)
C10.35974 (13)0.48118 (7)0.26329 (8)0.0240 (2)
H10.40790.54330.25860.029*
C20.33109 (13)0.47028 (8)0.36229 (8)0.0243 (2)
C30.23649 (13)0.52859 (8)0.41347 (8)0.0263 (2)
C40.24407 (13)0.48383 (8)0.50974 (8)0.0266 (2)
C50.17816 (15)0.50868 (9)0.58577 (9)0.0320 (3)
H50.11520.56240.58350.038*
C60.20691 (15)0.45208 (10)0.66709 (9)0.0354 (3)
H60.16240.46770.72070.043*
C70.29864 (15)0.37426 (9)0.67053 (8)0.0352 (3)
H70.31680.33730.72660.042*
C80.36576 (14)0.34857 (9)0.59259 (8)0.0314 (3)
H80.42890.29490.59470.038*
C90.33631 (13)0.40432 (8)0.51294 (8)0.0260 (2)
C100.38543 (13)0.39924 (8)0.42012 (8)0.0248 (2)
C110.52713 (13)0.33794 (8)0.31358 (8)0.0262 (2)
C120.63660 (14)0.27212 (8)0.30077 (9)0.0314 (3)
H120.66580.22470.34680.038*
C130.70268 (14)0.27624 (9)0.22043 (9)0.0337 (3)
H130.77820.23170.21100.040*
C140.65849 (14)0.34552 (9)0.15348 (9)0.0330 (3)
H140.70390.34870.09830.040*
C150.54789 (14)0.41008 (8)0.16735 (8)0.0291 (3)
H150.51880.45720.12100.035*
C160.47777 (13)0.40800 (8)0.24747 (8)0.0248 (2)
C170.20346 (13)0.47769 (8)0.18908 (8)0.0255 (2)
H170.12980.52310.20910.031*
C180.12395 (13)0.38332 (8)0.17816 (8)0.0280 (3)
C190.10045 (12)0.35606 (8)0.07625 (8)0.0253 (2)
C200.03310 (14)0.27627 (8)0.03180 (9)0.0307 (3)
H20−0.00950.23020.06660.037*
C210.03053 (14)0.26658 (8)−0.06495 (9)0.0332 (3)
H21−0.01410.2126−0.09690.040*
C220.09206 (15)0.33439 (9)−0.11675 (9)0.0334 (3)
H220.08930.3255−0.18300.040*
C230.15714 (14)0.41447 (8)−0.07265 (8)0.0303 (3)
H230.19820.4610−0.10770.036*
C240.16014 (13)0.42425 (7)0.02446 (8)0.0251 (2)
C250.22245 (13)0.50203 (8)0.08798 (8)0.0258 (2)
U11U22U33U12U13U23
O10.0330 (4)0.0288 (4)0.0296 (4)0.0069 (3)0.0081 (3)0.0060 (3)
O20.0399 (5)0.0292 (4)0.0385 (5)0.0078 (4)0.0125 (4)0.0058 (4)
O30.0468 (6)0.0541 (6)0.0294 (5)−0.0207 (5)0.0036 (4)0.0110 (4)
O40.0468 (5)0.0261 (4)0.0291 (4)−0.0079 (4)0.0049 (4)0.0039 (3)
C10.0249 (5)0.0234 (5)0.0231 (5)−0.0017 (4)0.0033 (4)0.0008 (4)
C20.0236 (5)0.0248 (5)0.0234 (5)−0.0020 (4)0.0015 (4)−0.0006 (4)
C30.0254 (5)0.0256 (5)0.0272 (6)−0.0028 (4)0.0037 (4)−0.0008 (4)
C40.0256 (5)0.0280 (6)0.0249 (5)−0.0048 (4)0.0014 (4)−0.0016 (4)
C50.0331 (6)0.0334 (6)0.0296 (6)−0.0035 (5)0.0060 (5)−0.0047 (5)
C60.0355 (7)0.0474 (7)0.0237 (6)−0.0090 (6)0.0065 (5)−0.0042 (5)
C70.0346 (6)0.0458 (7)0.0234 (6)−0.0079 (6)0.0010 (5)0.0059 (5)
C80.0286 (6)0.0358 (6)0.0274 (6)−0.0023 (5)−0.0004 (5)0.0047 (5)
C90.0233 (5)0.0290 (6)0.0241 (5)−0.0045 (4)0.0004 (4)−0.0006 (4)
C100.0221 (5)0.0255 (5)0.0255 (5)−0.0016 (4)0.0011 (4)−0.0009 (4)
C110.0250 (5)0.0270 (6)0.0263 (6)−0.0018 (4)0.0039 (4)−0.0002 (4)
C120.0291 (6)0.0273 (6)0.0366 (6)0.0019 (5)0.0028 (5)0.0004 (5)
C130.0276 (6)0.0328 (6)0.0408 (7)0.0030 (5)0.0067 (5)−0.0064 (5)
C140.0285 (6)0.0383 (7)0.0332 (6)−0.0027 (5)0.0088 (5)−0.0041 (5)
C150.0267 (6)0.0317 (6)0.0286 (6)−0.0027 (5)0.0043 (5)0.0009 (5)
C160.0217 (5)0.0247 (5)0.0271 (5)−0.0033 (4)0.0022 (4)−0.0014 (4)
C170.0263 (6)0.0264 (5)0.0233 (5)0.0017 (4)0.0032 (4)0.0032 (4)
C180.0223 (5)0.0336 (6)0.0269 (6)−0.0018 (5)0.0014 (4)0.0070 (5)
C190.0214 (5)0.0257 (5)0.0277 (6)0.0019 (4)0.0021 (4)0.0045 (4)
C200.0268 (6)0.0264 (6)0.0367 (6)−0.0022 (5)0.0010 (5)0.0059 (5)
C210.0324 (6)0.0259 (6)0.0387 (7)−0.0007 (5)0.0006 (5)−0.0046 (5)
C220.0370 (7)0.0345 (6)0.0287 (6)−0.0001 (5)0.0063 (5)−0.0046 (5)
C230.0337 (6)0.0304 (6)0.0272 (6)−0.0027 (5)0.0069 (5)0.0014 (5)
C240.0243 (5)0.0237 (5)0.0265 (6)0.0012 (4)0.0031 (4)0.0025 (4)
C250.0272 (5)0.0242 (5)0.0251 (5)0.0012 (4)0.0025 (4)0.0037 (4)
O1—C101.3400 (14)C11—C161.3956 (16)
O1—C111.4030 (13)C12—C131.3817 (18)
O2—C31.2185 (14)C12—H120.9500
O3—C181.2131 (14)C13—C141.3877 (18)
O4—C251.2123 (14)C13—H130.9500
C1—C21.4906 (15)C14—C151.3861 (17)
C1—C161.5256 (15)C14—H140.9500
C1—C171.5595 (15)C15—C161.3986 (16)
C1—H11.0000C15—H150.9500
C2—C101.3464 (16)C17—C251.5256 (15)
C2—C31.4709 (16)C17—C181.5268 (16)
C3—C41.5093 (16)C17—H171.0000
C4—C51.3715 (17)C18—C191.4829 (16)
C4—C91.4008 (16)C19—C201.3924 (16)
C5—C61.4034 (18)C19—C241.3937 (15)
C5—H50.9500C20—C211.3843 (18)
C6—C71.378 (2)C20—H200.9500
C6—H60.9500C21—C221.3977 (18)
C7—C81.4047 (18)C21—H210.9500
C7—H70.9500C22—C231.3874 (17)
C8—C91.3775 (16)C22—H220.9500
C8—H80.9500C23—C241.3888 (16)
C9—C101.4717 (15)C23—H230.9500
C11—C121.3873 (16)C24—C251.4818 (16)
C10—O1—C11115.17 (9)C12—C13—H13120.1
C2—C1—C16108.01 (9)C14—C13—H13120.1
C2—C1—C17110.81 (9)C15—C14—C13119.85 (11)
C16—C1—C17113.92 (9)C15—C14—H14120.1
C2—C1—H1108.0C13—C14—H14120.1
C16—C1—H1108.0C14—C15—C16122.03 (11)
C17—C1—H1108.0C14—C15—H15119.0
C10—C2—C3107.40 (10)C16—C15—H15119.0
C10—C2—C1123.94 (10)C11—C16—C15116.22 (10)
C3—C2—C1128.60 (10)C11—C16—C1122.27 (10)
O2—C3—C2127.35 (11)C15—C16—C1121.46 (10)
O2—C3—C4126.60 (11)C25—C17—C18103.92 (9)
C2—C3—C4106.03 (9)C25—C17—C1113.22 (9)
C5—C4—C9121.12 (11)C18—C17—C1114.84 (9)
C5—C4—C3131.06 (11)C25—C17—H17108.2
C9—C4—C3107.82 (10)C18—C17—H17108.2
C4—C5—C6117.79 (12)C1—C17—H17108.2
C4—C5—H5121.1O3—C18—C19126.10 (11)
C6—C5—H5121.1O3—C18—C17125.71 (11)
C7—C6—C5121.10 (11)C19—C18—C17108.20 (9)
C7—C6—H6119.4C20—C19—C24120.94 (11)
C5—C6—H6119.4C20—C19—C18129.36 (10)
C6—C7—C8121.16 (11)C24—C19—C18109.70 (10)
C6—C7—H7119.4C21—C20—C19117.57 (11)
C8—C7—H7119.4C21—C20—H20121.2
C9—C8—C7117.31 (12)C19—C20—H20121.2
C9—C8—H8121.3C20—C21—C22121.54 (11)
C7—C8—H8121.3C20—C21—H21119.2
C8—C9—C4121.52 (11)C22—C21—H21119.2
C8—C9—C10132.35 (11)C23—C22—C21120.82 (11)
C4—C9—C10106.13 (10)C23—C22—H22119.6
O1—C10—C2126.54 (10)C21—C22—H22119.6
O1—C10—C9120.86 (10)C22—C23—C24117.73 (11)
C2—C10—C9112.60 (10)C22—C23—H23121.1
C12—C11—C16122.74 (11)C24—C23—H23121.1
C12—C11—O1114.01 (10)C23—C24—C19121.38 (11)
C16—C11—O1123.21 (10)C23—C24—C25128.48 (10)
C13—C12—C11119.30 (11)C19—C24—C25110.14 (10)
C13—C12—H12120.3O4—C25—C24126.38 (10)
C11—C12—H12120.3O4—C25—C17125.60 (10)
C12—C13—C14119.85 (11)C24—C25—C17108.02 (9)
C16—C1—C2—C10−8.40 (14)O1—C11—C16—C15176.14 (10)
C17—C1—C2—C10117.03 (12)C12—C11—C16—C1−178.73 (10)
C16—C1—C2—C3174.83 (10)O1—C11—C16—C1−1.09 (17)
C17—C1—C2—C3−59.74 (14)C14—C15—C16—C110.92 (17)
C10—C2—C3—O2−177.52 (11)C14—C15—C16—C1178.17 (10)
C1—C2—C3—O2−0.33 (19)C2—C1—C16—C117.86 (14)
C10—C2—C3—C40.95 (12)C17—C1—C16—C11−115.70 (11)
C1—C2—C3—C4178.15 (10)C2—C1—C16—C15−169.22 (10)
O2—C3—C4—C5−1.7 (2)C17—C1—C16—C1567.21 (13)
C2—C3—C4—C5179.85 (12)C2—C1—C17—C25171.83 (9)
O2—C3—C4—C9178.00 (11)C16—C1—C17—C25−66.13 (12)
C2—C3—C4—C9−0.49 (12)C2—C1—C17—C18−69.02 (12)
C9—C4—C5—C60.34 (17)C16—C1—C17—C1853.01 (13)
C3—C4—C5—C6179.97 (11)C25—C17—C18—O3−179.89 (12)
C4—C5—C6—C70.17 (18)C1—C17—C18—O355.90 (16)
C5—C6—C7—C8−0.39 (19)C25—C17—C18—C190.28 (11)
C6—C7—C8—C90.09 (18)C1—C17—C18—C19−123.93 (10)
C7—C8—C9—C40.42 (17)O3—C18—C19—C200.1 (2)
C7—C8—C9—C10−179.89 (11)C17—C18—C19—C20179.97 (11)
C5—C4—C9—C8−0.65 (17)O3—C18—C19—C24−178.97 (12)
C3—C4—C9—C8179.64 (10)C17—C18—C19—C240.86 (12)
C5—C4—C9—C10179.59 (10)C24—C19—C20—C211.22 (17)
C3—C4—C9—C10−0.12 (12)C18—C19—C20—C21−177.80 (11)
C11—O1—C10—C26.15 (16)C19—C20—C21—C22−0.44 (18)
C11—O1—C10—C9−173.60 (9)C20—C21—C22—C23−0.48 (19)
C3—C2—C10—O1179.16 (10)C21—C22—C23—C240.59 (18)
C1—C2—C10—O11.80 (18)C22—C23—C24—C190.20 (17)
C3—C2—C10—C9−1.08 (13)C22—C23—C24—C25179.92 (11)
C1—C2—C10—C9−178.44 (10)C20—C19—C24—C23−1.13 (17)
C8—C9—C10—O10.82 (19)C18—C19—C24—C23178.07 (10)
C4—C9—C10—O1−179.45 (10)C20—C19—C24—C25179.10 (10)
C8—C9—C10—C2−178.95 (12)C18—C19—C24—C25−1.70 (13)
C4—C9—C10—C20.77 (13)C23—C24—C25—O41.7 (2)
C10—O1—C11—C12171.53 (10)C19—C24—C25—O4−178.55 (11)
C10—O1—C11—C16−6.30 (15)C23—C24—C25—C17−177.87 (11)
C16—C11—C12—C131.24 (18)C19—C24—C25—C171.87 (12)
O1—C11—C12—C13−176.60 (10)C18—C17—C25—O4179.17 (11)
C11—C12—C13—C14−0.34 (18)C1—C17—C25—O4−55.58 (15)
C12—C13—C14—C15−0.22 (18)C18—C17—C25—C24−1.26 (11)
C13—C14—C15—C16−0.09 (18)C1—C17—C25—C24124.00 (10)
C12—C11—C16—C15−1.50 (16)
D—H···AD—HH···AD···AD—H···A
C12—H12···O4i0.952.543.4687 (15)166
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C12H12O4i 0.952.543.4687(15)166

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Cyclohepta[b]pyran derivatives with platelet antiaggregating and other activities.

Authors:  A Bargagna; M Longobardi; E Mariani; P Schenone; F Rossi; M D'Amico; C Falzarano
Journal:  Farmaco       Date:  1992-03

3.  Psychopharmacological study with K 8409, a 1H-naphtho[2,1-b]pyran 3-dialkylamino substituted derivative.

Authors:  A Ermili; G Roma; M Buonamici; A Cuttica; M Galante; G Orsini; N Passerini
Journal:  Farmaco Sci       Date:  1979-06

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  4 in total

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