Literature DB >> 25995919

Crystal structure of (2S)-3-methyl-2-[(naphthalen-1-ylsulfon-yl)amino]-butanoic acid.

Muhammad Danish1, Muhammad Nawaz Tahir2, Nabila Jabeen1, Muhammad Asam Raza1.   

Abstract

The title compound, C15H17NO4S, was synthesized from n class="Chemical">l-valine and naphthalene-1-sulfonyl chloride. The hydrogen-bonded carb-oxy-lic acid groups form a catemer C(4) motif extending along [100]. The catemer structure is reinforced by a rather long N-H⋯O hydrogen bond, between the sulfamide N-H group and a carb-oxy-lic acid O atom [H⋯O = 2.52 (2) Å], and a C-H⋯O hydrogen bond.

Entities:  

Keywords:  catemer; crystal structure; hydrogen bonding; l-valine; naphthalen-1-ylsulfon­yl; π–π stacking inter­actions

Year:  2015        PMID: 25995919      PMCID: PMC4420138          DOI: 10.1107/S2056989015007057

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For related structures, see: Aguilar-Castro et al. (2004 ▸); Arshad et al. (2012 ▸); Mubashar-ur-Rehman et al. (2013 ▸).

Experimental

Crystal data

C15H17NO4S M = 307.35 Orthorhombic, a = 5.5006 (3) Å b = 13.7638 (8) Å c = 20.2148 (14) Å V = 1530.45 (16) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 296 K 0.38 × 0.22 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▸) T min = 0.920, T max = 0.956 7706 measured reflections 3290 independent reflections 2692 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.095 S = 1.02 3290 reflections 198 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.24 e Å−3 Absolute structure: Flack x determined using 919 quotients [(I +)-(I -)]/[(I +)+(I -)] (Parsons et al., 2013 ▸) Absolute structure parameter: −0.05 (5)

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015007057/gk2628sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007057/gk2628Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015007057/gk2628Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015007057/gk2628fig1.tif View of the asymmetric unit of title compound with the atom numbering scheme. The displacement ellipsoids are drawn at the 50% probability level. H-atoms are shown as small circles of arbitrary radii. Click here for additional data file. PLATON . DOI: 10.1107/S2056989015007057/gk2628fig2.tif The partial packing (PLATON; Spek, 2009) which shows that mol­ecules form one dimensional polymeric network with different hydrogen-bond ring motifs. n class="Disease">H atoms not involved in hydrogen bonding are omitted for clarity. CCDC reference: 1058549 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H17NO4SDx = 1.334 Mg m3
Mr = 307.35Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 2692 reflections
a = 5.5006 (3) Åθ = 3.1–27.0°
b = 13.7638 (8) ŵ = 0.23 mm1
c = 20.2148 (14) ÅT = 296 K
V = 1530.45 (16) Å3Needle, colorless
Z = 40.38 × 0.22 × 0.20 mm
F(000) = 648
Bruker Kappa APEXII CCD diffractometer3290 independent reflections
Radiation source: fine-focus sealed tube2692 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Detector resolution: 7.80 pixels mm-1θmax = 27.0°, θmin = 3.1°
ω scansh = −6→7
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −10→17
Tmin = 0.920, Tmax = 0.956l = −21→25
7706 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0423P)2 + 0.0587P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3290 reflectionsΔρmax = 0.22 e Å3
198 parametersΔρmin = −0.24 e Å3
0 restraintsAbsolute structure: Flack x determined using 919 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.05 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.22778 (13)0.44851 (5)0.11598 (4)0.0360 (2)
O10.8107 (4)0.63127 (18)−0.00511 (13)0.0473 (6)
H10.836 (7)0.692 (3)−0.008 (2)0.071*
O20.4319 (5)0.67953 (17)0.01812 (14)0.0549 (7)
O3−0.0306 (4)0.43808 (16)0.11995 (12)0.0463 (6)
O40.3786 (4)0.36514 (16)0.12075 (12)0.0509 (6)
N10.2790 (4)0.49709 (18)0.04429 (12)0.0328 (6)
H1A0.180 (5)0.539 (2)0.0325 (16)0.039*
C10.5806 (6)0.6161 (2)0.01096 (15)0.0349 (7)
C20.5237 (5)0.5091 (2)0.01805 (15)0.0329 (7)
H20.63860.48090.04970.039*
C30.5555 (6)0.4565 (3)−0.04864 (19)0.0510 (9)
H30.72060.4699−0.06440.061*
C40.3806 (8)0.4953 (4)−0.0997 (2)0.0839 (15)
H4A0.40620.4623−0.14090.126*
H4B0.40770.5637−0.10560.126*
H4C0.21680.4847−0.08500.126*
C50.5323 (12)0.3476 (3)−0.0401 (3)0.105 (2)
H5A0.64240.3261−0.00630.158*
H5B0.57110.3159−0.08110.158*
H5C0.36870.3318−0.02760.158*
C60.3219 (5)0.5300 (3)0.17904 (16)0.0410 (8)
C70.5143 (6)0.5024 (3)0.21720 (19)0.0572 (10)
H70.59610.44490.20770.069*
C80.5895 (8)0.5597 (4)0.2704 (2)0.0786 (15)
H80.72160.54020.29590.094*
C90.4737 (8)0.6422 (4)0.2851 (2)0.0762 (15)
H90.52580.67890.32110.091*
C100.2755 (8)0.6745 (3)0.24761 (19)0.0611 (11)
C110.1958 (6)0.6187 (2)0.19223 (17)0.0447 (8)
C12−0.0009 (7)0.6539 (3)0.1546 (2)0.0542 (10)
H12−0.05540.61850.11830.065*
C13−0.1127 (9)0.7393 (3)0.1708 (2)0.0769 (14)
H13−0.23950.76240.14470.092*
C14−0.0376 (13)0.7922 (3)0.2262 (3)0.0939 (19)
H14−0.11740.84950.23750.113*
C150.1496 (11)0.7608 (4)0.2635 (2)0.0829 (17)
H150.19670.79650.30030.099*
U11U22U33U12U13U23
S10.0350 (4)0.0333 (4)0.0397 (4)−0.0026 (4)0.0009 (3)0.0062 (4)
O10.0410 (14)0.0304 (12)0.0705 (17)−0.0076 (11)0.0045 (11)0.0069 (13)
O20.0536 (15)0.0311 (12)0.0799 (19)0.0074 (13)0.0100 (13)0.0071 (13)
O30.0354 (11)0.0510 (13)0.0525 (14)−0.0103 (10)0.0034 (10)0.0064 (13)
O40.0541 (13)0.0363 (12)0.0622 (16)0.0081 (11)0.0020 (13)0.0133 (13)
N10.0310 (13)0.0309 (13)0.0364 (14)0.0026 (12)0.0001 (11)0.0053 (11)
C10.0378 (17)0.0315 (17)0.0354 (17)0.0015 (15)−0.0021 (14)0.0008 (14)
C20.0307 (16)0.0291 (16)0.0390 (18)−0.0006 (13)0.0007 (13)0.0041 (15)
C30.0468 (19)0.044 (2)0.062 (2)−0.0076 (18)0.0161 (17)−0.0155 (19)
C40.087 (3)0.120 (4)0.045 (3)−0.014 (3)−0.002 (2)−0.024 (3)
C50.152 (5)0.045 (3)0.119 (5)−0.008 (3)0.042 (4)−0.031 (3)
C60.0362 (17)0.052 (2)0.0351 (18)−0.0101 (15)0.0041 (13)0.0047 (15)
C70.041 (2)0.081 (3)0.050 (2)−0.005 (2)−0.0005 (16)0.004 (2)
C80.054 (2)0.135 (5)0.048 (3)−0.023 (3)−0.010 (2)0.004 (3)
C90.077 (3)0.111 (4)0.040 (2)−0.040 (3)−0.001 (2)−0.011 (3)
C100.076 (3)0.064 (2)0.044 (2)−0.030 (3)0.018 (2)−0.0049 (19)
C110.053 (2)0.0432 (19)0.0378 (18)−0.0135 (18)0.0101 (16)−0.0006 (16)
C120.068 (2)0.047 (2)0.047 (2)0.005 (2)0.0091 (19)−0.0024 (19)
C130.102 (3)0.058 (3)0.071 (3)0.023 (3)0.023 (3)0.004 (2)
C140.157 (6)0.045 (3)0.079 (4)0.011 (3)0.047 (4)−0.007 (3)
C150.136 (5)0.056 (3)0.056 (3)−0.027 (3)0.026 (3)−0.020 (2)
S1—O41.419 (2)C5—H5C0.9600
S1—O31.431 (2)C6—C71.364 (4)
S1—N11.621 (3)C6—C111.430 (5)
S1—C61.775 (3)C7—C81.397 (6)
O1—C11.323 (4)C7—H70.9300
O1—H10.85 (4)C8—C91.335 (7)
O2—C11.205 (4)C8—H80.9300
N1—C21.456 (4)C9—C101.401 (6)
N1—H1A0.83 (2)C9—H90.9300
C1—C21.513 (4)C10—C151.412 (6)
C2—C31.540 (5)C10—C111.426 (5)
C2—H20.9800C11—C121.408 (5)
C3—C41.508 (6)C12—C131.366 (5)
C3—C51.514 (6)C12—H120.9300
C3—H30.9800C13—C141.400 (7)
C4—H4A0.9600C13—H130.9300
C4—H4B0.9600C14—C151.347 (7)
C4—H4C0.9600C14—H140.9300
C5—H5A0.9600C15—H150.9300
C5—H5B0.9600
O4—S1—O3119.71 (14)C3—C5—H5C109.5
O4—S1—N1107.01 (14)H5A—C5—H5C109.5
O3—S1—N1105.33 (14)H5B—C5—H5C109.5
O4—S1—C6106.96 (16)C7—C6—C11120.6 (3)
O3—S1—C6108.23 (15)C7—C6—S1117.2 (3)
N1—S1—C6109.32 (14)C11—C6—S1122.2 (2)
C1—O1—H1109 (3)C6—C7—C8120.5 (4)
C2—N1—S1122.2 (2)C6—C7—H7119.7
C2—N1—H1A115 (2)C8—C7—H7119.7
S1—N1—H1A115 (2)C9—C8—C7120.7 (4)
O2—C1—O1124.3 (3)C9—C8—H8119.7
O2—C1—C2123.6 (3)C7—C8—H8119.7
O1—C1—C2112.0 (3)C8—C9—C10121.4 (4)
N1—C2—C1109.6 (2)C8—C9—H9119.3
N1—C2—C3111.8 (2)C10—C9—H9119.3
C1—C2—C3110.5 (3)C9—C10—C15121.7 (5)
N1—C2—H2108.3C9—C10—C11119.6 (4)
C1—C2—H2108.3C15—C10—C11118.7 (4)
C3—C2—H2108.3C12—C11—C10118.4 (4)
C4—C3—C5112.0 (4)C12—C11—C6124.5 (3)
C4—C3—C2111.1 (3)C10—C11—C6117.2 (3)
C5—C3—C2110.8 (3)C13—C12—C11120.8 (4)
C4—C3—H3107.5C13—C12—H12119.6
C5—C3—H3107.5C11—C12—H12119.6
C2—C3—H3107.5C12—C13—C14120.4 (5)
C3—C4—H4A109.5C12—C13—H13119.8
C3—C4—H4B109.5C14—C13—H13119.8
H4A—C4—H4B109.5C15—C14—C13120.4 (5)
C3—C4—H4C109.5C15—C14—H14119.8
H4A—C4—H4C109.5C13—C14—H14119.8
H4B—C4—H4C109.5C14—C15—C10121.2 (5)
C3—C5—H5A109.5C14—C15—H15119.4
C3—C5—H5B109.5C10—C15—H15119.4
H5A—C5—H5B109.5
O4—S1—N1—C2−44.2 (3)S1—C6—C7—C8−176.0 (3)
O3—S1—N1—C2−172.6 (2)C6—C7—C8—C90.4 (6)
C6—S1—N1—C271.3 (3)C7—C8—C9—C10−0.6 (7)
S1—N1—C2—C1−115.5 (3)C8—C9—C10—C15178.9 (4)
S1—N1—C2—C3121.6 (3)C8—C9—C10—C11−0.4 (6)
O2—C1—C2—N1−8.8 (4)C9—C10—C11—C12−178.8 (3)
O1—C1—C2—N1172.4 (3)C15—C10—C11—C121.9 (5)
O2—C1—C2—C3114.9 (3)C9—C10—C11—C61.6 (5)
O1—C1—C2—C3−64.0 (3)C15—C10—C11—C6−177.8 (3)
N1—C2—C3—C460.0 (4)C7—C6—C11—C12178.6 (3)
C1—C2—C3—C4−62.4 (4)S1—C6—C11—C12−4.7 (4)
N1—C2—C3—C5−65.3 (4)C7—C6—C11—C10−1.8 (5)
C1—C2—C3—C5172.3 (4)S1—C6—C11—C10174.9 (2)
O4—S1—C6—C72.0 (3)C10—C11—C12—C130.0 (5)
O3—S1—C6—C7132.3 (3)C6—C11—C12—C13179.6 (4)
N1—S1—C6—C7−113.5 (3)C11—C12—C13—C14−1.7 (6)
O4—S1—C6—C11−174.8 (2)C12—C13—C14—C151.6 (8)
O3—S1—C6—C11−44.5 (3)C13—C14—C15—C100.4 (8)
N1—S1—C6—C1169.7 (3)C9—C10—C15—C14178.6 (4)
C11—C6—C7—C80.9 (5)C11—C10—C15—C14−2.1 (7)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.85 (4)1.86 (4)2.701 (3)173 (4)
N1—H1A···O1ii0.83 (2)2.52 (2)3.323 (3)166 (3)
C2—H2···O3iii0.982.383.348 (4)169
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1O2i 0.85(4)1.86(4)2.701(3)173(4)
N1H1AO1ii 0.83(2)2.52(2)3.323(3)166(3)
C2H2O3iii 0.982.383.348(4)169

Symmetry codes: (i) ; (ii) ; (iii) .

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