Literature DB >> 25995913

Crystal stucture of methyl 2-({[2-(meth-oxy-carbon-yl)phen-yl]carbamo-yl}amino)-benzoate.

Hasna Yassine1, Mostafa Khouili1, Lahcen El Ammari2, Mohamed Saadi2, El Mostafa Ketatni3.   

Abstract

In the title compound, C17H16N2O5, the dihedral angles between the central n class="Chemical">urea [N-C(=O)-N] fragment and its attached benzene rings are 20.20 (14) and 24.24 (13)°; the dihedral angle between the aromatic rings is 42.1 (1)°. The mol-ecular conformation is consolidated by two intra-molecular N-H⋯O hydrogen bonds, which both generate S(6) rings. In the crystal, inversion dimers linked by pairs of C-H⋯O inter-actions generate R 2 (2)(14) loops. The dimers are linked by further C-H⋯O inter-actions into (011) sheets.

Entities:  

Keywords:  crystal structure; hydrogen bonding; urea derivative

Year:  2015        PMID: 25995913      PMCID: PMC4420073          DOI: 10.1107/S2056989015006465

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the medical and biological activities of urea derivatives, see: Abad et al. (2004 ▸); Chen et al. (2005 ▸); Batra et al. (2006 ▸). For cytokinin activity, see: Wang et al. (2001 ▸); Ricci et al. (2005 ▸).

Experimental

Crystal data

C17H16N2O5 M = 328.32 Monoclinic, a = 9.005 (8) Å b = 23.80 (2) Å c = 7.400 (7) Å β = 93.66 (4)° V = 1583 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.42 × 0.36 × 0.29 mm

Data collection

Bruker X8 APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.693, T max = 0.747 11500 measured reflections 3364 independent reflections 1667 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.137 S = 0.95 3364 reflections 220 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015006465/hb7393sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015006465/hb7393Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015006465/hb7393Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015006465/hb7393fig1.tif A view of the mol­ecule of the title compound, showing displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015006465/hb7393fig2.tif Part of the crystal structure of the title compound, showing hydrogen-bonded (dashed lines) dimers. CCDC reference: 1056943 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H16N2O5F(000) = 688
Mr = 328.32Dx = 1.378 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3364 reflections
a = 9.005 (8) Åθ = 2.4–26.7°
b = 23.80 (2) ŵ = 0.10 mm1
c = 7.400 (7) ÅT = 296 K
β = 93.66 (4)°Block, yellow
V = 1583 (3) Å30.42 × 0.36 × 0.29 mm
Z = 4
Bruker X8 APEXII CCD diffractometer3364 independent reflections
Radiation source: fine-focus sealed tube1667 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.066
φ and ω scansθmax = 26.7°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→7
Tmin = 0.693, Tmax = 0.747k = −29→30
11500 measured reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H-atom parameters constrained
wR(F2) = 0.137w = 1/[σ2(Fo2) + (0.0578P)2] where P = (Fo2 + 2Fc2)/3
S = 0.95(Δ/σ)max < 0.001
3364 reflectionsΔρmax = 0.21 e Å3
220 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0052 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.8216 (3)0.50547 (11)0.6105 (4)0.0617 (8)
H1A0.87960.53510.56240.093*
H1B0.80230.47720.51940.093*
H1C0.87550.48910.71360.093*
C20.5813 (3)0.49037 (10)0.7155 (3)0.0413 (6)
C30.4424 (2)0.51598 (9)0.7748 (3)0.0370 (6)
C40.4261 (3)0.57446 (9)0.7763 (3)0.0463 (6)
H40.50280.59680.73770.056*
C50.3000 (3)0.59993 (10)0.8334 (3)0.0524 (7)
H50.29130.63890.83240.063*
C60.1861 (3)0.56676 (10)0.8925 (3)0.0496 (7)
H60.10120.58370.93280.060*
C70.1975 (3)0.50878 (9)0.8921 (3)0.0421 (6)
H70.11990.48710.93150.050*
C80.3249 (3)0.48226 (9)0.8331 (3)0.0377 (6)
C90.2326 (3)0.38375 (10)0.8583 (3)0.0429 (6)
C100.2281 (3)0.27870 (9)0.8808 (3)0.0420 (6)
C110.0793 (3)0.27180 (10)0.8152 (3)0.0519 (7)
H110.02190.30310.78270.062*
C120.0181 (3)0.21894 (11)0.7988 (4)0.0607 (8)
H12−0.08000.21500.75350.073*
C130.0991 (3)0.17166 (11)0.8482 (4)0.0627 (8)
H130.05600.13620.83710.075*
C140.2450 (3)0.17759 (10)0.9142 (3)0.0511 (7)
H140.29970.14570.94780.061*
C150.3129 (3)0.23038 (9)0.9319 (3)0.0407 (6)
C160.4711 (3)0.23461 (10)1.0022 (3)0.0460 (6)
C170.6894 (3)0.18555 (11)1.1114 (4)0.0695 (9)
H17A0.69800.20261.22920.104*
H17B0.74700.20661.03000.104*
H17C0.72580.14771.11960.104*
N20.2964 (2)0.33173 (7)0.8915 (3)0.0472 (5)
H2N0.39030.33060.92090.057*
N30.3414 (2)0.42374 (7)0.8385 (3)0.0443 (5)
H3N0.43110.41400.81690.053*
O10.68143 (18)0.52810 (7)0.6650 (2)0.0536 (5)
O20.60738 (18)0.44002 (7)0.7108 (2)0.0557 (5)
O30.0994 (2)0.39320 (7)0.8476 (3)0.0692 (6)
O40.5330 (2)0.18523 (7)1.0436 (3)0.0618 (5)
O50.5419 (2)0.27802 (7)1.0207 (3)0.0710 (6)
U11U22U33U12U13U23
C10.0386 (16)0.080 (2)0.0678 (19)−0.0038 (14)0.0124 (14)0.0022 (15)
C20.0424 (15)0.0422 (15)0.0387 (14)−0.0047 (12)−0.0025 (12)0.0035 (11)
C30.0377 (14)0.0362 (13)0.0364 (13)−0.0004 (11)−0.0018 (11)0.0031 (10)
C40.0503 (16)0.0346 (13)0.0536 (16)−0.0020 (12)0.0010 (13)0.0064 (11)
C50.0583 (18)0.0350 (14)0.0638 (18)0.0053 (13)0.0029 (14)−0.0007 (12)
C60.0504 (16)0.0481 (15)0.0501 (16)0.0133 (13)0.0017 (13)−0.0014 (12)
C70.0438 (15)0.0390 (14)0.0435 (15)0.0014 (12)0.0039 (12)0.0005 (11)
C80.0414 (14)0.0359 (13)0.0352 (13)0.0003 (11)−0.0029 (11)0.0003 (10)
C90.0443 (16)0.0388 (14)0.0465 (15)−0.0055 (12)0.0091 (12)0.0008 (11)
C100.0484 (16)0.0390 (14)0.0396 (14)−0.0089 (12)0.0111 (12)0.0001 (10)
C110.0528 (18)0.0471 (16)0.0561 (17)−0.0068 (13)0.0063 (14)0.0036 (12)
C120.0591 (19)0.0541 (18)0.0686 (19)−0.0156 (15)0.0011 (15)−0.0027 (14)
C130.066 (2)0.0463 (16)0.076 (2)−0.0211 (15)0.0036 (16)−0.0101 (14)
C140.0626 (19)0.0346 (14)0.0570 (17)−0.0066 (13)0.0117 (14)−0.0041 (12)
C150.0467 (15)0.0362 (13)0.0404 (14)−0.0069 (11)0.0115 (12)−0.0024 (10)
C160.0584 (18)0.0328 (14)0.0480 (16)−0.0052 (13)0.0128 (13)0.0008 (11)
C170.0476 (18)0.0535 (17)0.107 (3)0.0005 (14)0.0035 (17)0.0059 (16)
N20.0441 (12)0.0362 (11)0.0614 (14)−0.0054 (10)0.0046 (11)0.0055 (10)
N30.0384 (12)0.0321 (11)0.0632 (14)0.0010 (9)0.0094 (10)0.0043 (9)
O10.0435 (11)0.0497 (10)0.0688 (12)−0.0056 (8)0.0134 (9)0.0033 (8)
O20.0486 (11)0.0416 (10)0.0780 (13)0.0030 (9)0.0137 (9)−0.0019 (9)
O30.0417 (11)0.0492 (11)0.1177 (18)−0.0013 (9)0.0138 (11)−0.0042 (10)
O40.0544 (12)0.0369 (10)0.0938 (15)−0.0016 (9)0.0033 (10)0.0022 (9)
O50.0606 (13)0.0380 (11)0.1121 (17)−0.0105 (9)−0.0126 (12)0.0073 (10)
C1—O11.453 (3)C10—N21.404 (3)
C1—H1A0.9600C10—C111.405 (4)
C1—H1B0.9600C10—C151.418 (3)
C1—H1C0.9600C11—C121.376 (3)
C2—O21.222 (3)C11—H110.9300
C2—O11.342 (3)C12—C131.377 (4)
C2—C31.483 (3)C12—H120.9300
C3—C41.400 (3)C13—C141.379 (4)
C3—C81.417 (3)C13—H130.9300
C4—C51.378 (3)C14—C151.400 (3)
C4—H40.9300C14—H140.9300
C5—C61.387 (3)C15—C161.489 (4)
C5—H50.9300C16—O51.217 (3)
C6—C71.384 (3)C16—O41.328 (3)
C6—H60.9300C17—O41.465 (3)
C7—C81.403 (3)C17—H17A0.9600
C7—H70.9300C17—H17B0.9600
C8—N31.401 (3)C17—H17C0.9600
C9—O31.218 (3)N2—H2N0.8600
C9—N21.381 (3)N3—H3N0.8646
C9—N31.381 (3)
O1—C1—H1A109.5C12—C11—C10120.3 (2)
O1—C1—H1B109.5C12—C11—H11119.8
H1A—C1—H1B109.5C10—C11—H11119.8
O1—C1—H1C109.5C11—C12—C13121.4 (3)
H1A—C1—H1C109.5C11—C12—H12119.3
H1B—C1—H1C109.5C13—C12—H12119.3
O2—C2—O1121.0 (2)C12—C13—C14119.1 (2)
O2—C2—C3125.3 (2)C12—C13—H13120.5
O1—C2—C3113.7 (2)C14—C13—H13120.5
C4—C3—C8118.7 (2)C13—C14—C15121.7 (2)
C4—C3—C2120.1 (2)C13—C14—H14119.2
C8—C3—C2121.2 (2)C15—C14—H14119.2
C5—C4—C3121.9 (2)C14—C15—C10118.6 (2)
C5—C4—H4119.0C14—C15—C16119.7 (2)
C3—C4—H4119.0C10—C15—C16121.7 (2)
C4—C5—C6119.1 (2)O5—C16—O4121.1 (3)
C4—C5—H5120.4O5—C16—C15125.4 (2)
C6—C5—H5120.4O4—C16—C15113.5 (2)
C7—C6—C5120.7 (2)O4—C17—H17A109.5
C7—C6—H6119.6O4—C17—H17B109.5
C5—C6—H6119.6H17A—C17—H17B109.5
C6—C7—C8120.8 (2)O4—C17—H17C109.5
C6—C7—H7119.6H17A—C17—H17C109.5
C8—C7—H7119.6H17B—C17—H17C109.5
N3—C8—C7121.7 (2)C9—N2—C10128.3 (2)
N3—C8—C3119.4 (2)C9—N2—H2N117.6
C7—C8—C3118.7 (2)C10—N2—H2N114.0
O3—C9—N2125.1 (2)C9—N3—C8127.8 (2)
O3—C9—N3124.7 (2)C9—N3—H3N120.8
N2—C9—N3110.3 (2)C8—N3—H3N111.1
N2—C10—C11122.0 (2)C2—O1—C1116.1 (2)
N2—C10—C15119.2 (2)C16—O4—C17117.03 (19)
C11—C10—C15118.8 (2)
O2—C2—C3—C4179.2 (2)C13—C14—C15—C16−179.4 (2)
O1—C2—C3—C4−0.7 (3)N2—C10—C15—C14−177.6 (2)
O2—C2—C3—C80.1 (3)C11—C10—C15—C140.3 (3)
O1—C2—C3—C8−179.83 (19)N2—C10—C15—C162.0 (3)
C8—C3—C4—C50.3 (3)C11—C10—C15—C16179.9 (2)
C2—C3—C4—C5−178.9 (2)C14—C15—C16—O5178.9 (2)
C3—C4—C5—C60.5 (4)C10—C15—C16—O5−0.8 (4)
C4—C5—C6—C7−0.9 (4)C14—C15—C16—O4−0.5 (3)
C5—C6—C7—C80.4 (3)C10—C15—C16—O4179.9 (2)
C6—C7—C8—N3177.4 (2)O3—C9—N2—C1015.1 (4)
C6—C7—C8—C30.4 (3)N3—C9—N2—C10−164.8 (2)
C4—C3—C8—N3−177.8 (2)C11—C10—N2—C96.1 (4)
C2—C3—C8—N31.4 (3)C15—C10—N2—C9−176.1 (2)
C4—C3—C8—C7−0.8 (3)O3—C9—N3—C811.5 (4)
C2—C3—C8—C7178.4 (2)N2—C9—N3—C8−168.6 (2)
N2—C10—C11—C12177.0 (2)C7—C8—N3—C916.1 (3)
C15—C10—C11—C12−0.9 (4)C3—C8—N3—C9−167.0 (2)
C10—C11—C12—C131.0 (4)O2—C2—O1—C1−1.7 (3)
C11—C12—C13—C14−0.5 (4)C3—C2—O1—C1178.3 (2)
C12—C13—C14—C15−0.2 (4)O5—C16—O4—C17−0.2 (4)
C13—C14—C15—C100.2 (4)C15—C16—O4—C17179.1 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2N···O50.861.962.677 (3)140
N3—H3N···O20.861.922.659 (3)144
C6—H6···O3i0.932.573.442 (4)157
C17—H17C···O2ii0.962.463.176 (4)132
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N2H2NO50.861.962.677(3)140
N3H3NO20.861.922.659(3)144
C6H6O3i 0.932.573.442(4)157
C17H17CO2ii 0.962.463.176(4)132

Symmetry codes: (i) ; (ii) .

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