| Literature DB >> 25995896 |
Jin-Jin Yan1, Chang-Ge Zheng1.
Abstract
In the title compound, [Pd(C6H4F)I(C6H16N2)], the Pd(II) atom is coordinated by two N atoms from the N,N,N',N'-tetra-methyl-ethylenedi-amine ligand, a C atom of the 4-fluoro-phenyl group and an iodide ligand in a distorted square-planar geometry, with an average deviation from the least-squares plane through the ligand donor atoms of 0.0159 (2) Å. The angles about the Pd(II) atom range from 83.35 (16) to 178.59 (11)°. In the crystal, weak C-H⋯F and C-H⋯I hydrogen bonds link the mol-ecules into sheets in the bc plane.Entities:
Keywords: crystal structure; hydrogen bonding; palladium(II) complex; single-crystal X-ray study; square-planar coordination; tetramethylethylenediamine
Year: 2015 PMID: 25995896 PMCID: PMC4420056 DOI: 10.1107/S2056989015008014
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| [Pd(C6H4F)I(C6H16N2)] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 8524 reflections |
| θ = 2.7–28.3° | |
| µ = 3.27 mm−1 | |
| β = 93.152 (2)° | Block, colorless |
| 0.26 × 0.24 × 0.20 mm | |
| Bruker APEXII CCD diffractometer | 2827 independent reflections |
| Radiation source: fine-focus sealed tube | 2736 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.6°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 10757 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2827 reflections | (Δ/σ)max = 0.001 |
| 158 parameters | Δρmax = 1.15 e Å−3 |
| 0 restraints | Δρmin = −1.76 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.26525 (4) | 0.69994 (3) | 0.390741 (13) | 0.01328 (16) | |
| I1 | 0.52911 (4) | 0.74248 (3) | 0.412548 (15) | 0.02671 (17) | |
| N2 | 0.2556 (4) | 0.5701 (3) | 0.44807 (16) | 0.0182 (8) | |
| N1 | 0.0479 (4) | 0.6607 (3) | 0.37289 (17) | 0.0182 (9) | |
| C4 | 0.1050 (6) | 0.5433 (4) | 0.4489 (2) | 0.0273 (12) | |
| H4A | 0.0597 | 0.5893 | 0.4737 | 0.033* | |
| H4B | 0.0956 | 0.4722 | 0.4617 | 0.033* | |
| C7 | 0.2585 (5) | 0.8106 (4) | 0.3346 (2) | 0.0188 (10) | |
| C9 | 0.2906 (6) | 0.8594 (5) | 0.2421 (2) | 0.0304 (12) | |
| H9 | 0.3254 | 0.8453 | 0.2087 | 0.036* | |
| C5 | 0.3356 (6) | 0.4817 (4) | 0.4266 (2) | 0.0243 (11) | |
| H5A | 0.3259 | 0.4216 | 0.4491 | 0.036* | |
| H5B | 0.4339 | 0.5002 | 0.4258 | 0.036* | |
| H5C | 0.2990 | 0.4659 | 0.3908 | 0.036* | |
| C12 | 0.1910 (5) | 0.9053 (4) | 0.3415 (2) | 0.0206 (10) | |
| H12 | 0.1600 | 0.9221 | 0.3751 | 0.025* | |
| C11 | 0.1680 (6) | 0.9762 (4) | 0.2996 (2) | 0.0245 (11) | |
| H11 | 0.1202 | 1.0386 | 0.3047 | 0.029* | |
| C8 | 0.3101 (6) | 0.7898 (4) | 0.2838 (2) | 0.0260 (12) | |
| H8 | 0.3584 | 0.7277 | 0.2783 | 0.031* | |
| C1 | −0.0461 (6) | 0.7340 (5) | 0.3997 (3) | 0.0280 (12) | |
| H1A | −0.0455 | 0.8004 | 0.3819 | 0.042* | |
| H1B | −0.0130 | 0.7425 | 0.4365 | 0.042* | |
| H1C | −0.1407 | 0.7066 | 0.3982 | 0.042* | |
| C2 | 0.0035 (6) | 0.6583 (5) | 0.3150 (2) | 0.0296 (12) | |
| H2A | 0.0678 | 0.6153 | 0.2963 | 0.044* | |
| H2B | 0.0045 | 0.7280 | 0.3008 | 0.044* | |
| H2C | −0.0905 | 0.6301 | 0.3105 | 0.044* | |
| C10 | 0.2174 (6) | 0.9516 (4) | 0.2509 (2) | 0.0256 (11) | |
| C6 | 0.3130 (7) | 0.5902 (5) | 0.5036 (2) | 0.0298 (12) | |
| H6A | 0.2608 | 0.6459 | 0.5190 | 0.045* | |
| H6B | 0.4110 | 0.6094 | 0.5030 | 0.045* | |
| H6C | 0.3043 | 0.5281 | 0.5248 | 0.045* | |
| C3 | 0.0317 (6) | 0.5531 (4) | 0.3942 (2) | 0.0258 (11) | |
| H3A | 0.0719 | 0.5033 | 0.3700 | 0.031* | |
| H3B | −0.0681 | 0.5371 | 0.3964 | 0.031* | |
| F1 | 0.1947 (4) | 1.0191 (3) | 0.20905 (13) | 0.0387 (9) |
| Pd1 | 0.0155 (2) | 0.0132 (2) | 0.0113 (2) | 0.00004 (12) | 0.00249 (15) | 0.00002 (12) |
| I1 | 0.0180 (2) | 0.0254 (2) | 0.0364 (3) | −0.00383 (12) | −0.00055 (17) | 0.00083 (14) |
| N2 | 0.024 (2) | 0.017 (2) | 0.014 (2) | 0.0018 (17) | 0.0023 (16) | −0.0014 (16) |
| N1 | 0.017 (2) | 0.015 (2) | 0.022 (2) | 0.0013 (16) | 0.0000 (16) | −0.0027 (17) |
| C4 | 0.036 (3) | 0.024 (3) | 0.024 (3) | 0.002 (2) | 0.016 (2) | 0.004 (2) |
| C7 | 0.021 (2) | 0.022 (2) | 0.014 (2) | −0.002 (2) | 0.0019 (19) | −0.0040 (19) |
| C9 | 0.038 (3) | 0.034 (3) | 0.020 (3) | −0.004 (3) | 0.007 (2) | 0.003 (2) |
| C5 | 0.035 (3) | 0.018 (2) | 0.020 (3) | 0.001 (2) | 0.000 (2) | −0.001 (2) |
| C12 | 0.024 (2) | 0.021 (3) | 0.017 (2) | −0.006 (2) | 0.0037 (19) | −0.002 (2) |
| C11 | 0.027 (3) | 0.023 (3) | 0.024 (3) | 0.001 (2) | 0.000 (2) | 0.006 (2) |
| C8 | 0.035 (3) | 0.025 (3) | 0.019 (3) | 0.003 (2) | 0.010 (2) | 0.001 (2) |
| C1 | 0.021 (3) | 0.026 (3) | 0.038 (3) | 0.004 (2) | 0.011 (2) | −0.003 (2) |
| C2 | 0.034 (3) | 0.037 (3) | 0.018 (3) | −0.003 (3) | −0.005 (2) | 0.000 (2) |
| C10 | 0.037 (3) | 0.025 (3) | 0.015 (2) | −0.009 (2) | −0.001 (2) | 0.009 (2) |
| C6 | 0.047 (3) | 0.028 (3) | 0.014 (3) | 0.004 (3) | 0.001 (2) | 0.000 (2) |
| C3 | 0.024 (3) | 0.021 (3) | 0.032 (3) | −0.004 (2) | 0.003 (2) | 0.000 (2) |
| F1 | 0.053 (2) | 0.039 (2) | 0.0244 (18) | −0.0003 (17) | 0.0019 (15) | 0.0191 (15) |
| Pd1—C7 | 1.990 (5) | C5—H5B | 0.9600 |
| Pd1—N1 | 2.138 (4) | C5—H5C | 0.9600 |
| Pd1—N2 | 2.198 (4) | C12—C11 | 1.393 (7) |
| Pd1—I1 | 2.5823 (7) | C12—H12 | 0.9300 |
| N2—C4 | 1.466 (7) | C11—C10 | 1.361 (8) |
| N2—C5 | 1.479 (6) | C11—H11 | 0.9300 |
| N2—C6 | 1.482 (7) | C8—H8 | 0.9300 |
| N1—C1 | 1.477 (7) | C1—H1A | 0.9600 |
| N1—C2 | 1.482 (7) | C1—H1B | 0.9600 |
| N1—C3 | 1.488 (7) | C1—H1C | 0.9600 |
| C4—C3 | 1.501 (8) | C2—H2A | 0.9600 |
| C4—H4A | 0.9700 | C2—H2B | 0.9600 |
| C4—H4B | 0.9700 | C2—H2C | 0.9600 |
| C7—C12 | 1.385 (8) | C10—F1 | 1.364 (6) |
| C7—C8 | 1.410 (7) | C6—H6A | 0.9600 |
| C9—C8 | 1.376 (8) | C6—H6B | 0.9600 |
| C9—C10 | 1.392 (9) | C6—H6C | 0.9600 |
| C9—H9 | 0.9300 | C3—H3A | 0.9700 |
| C5—H5A | 0.9600 | C3—H3B | 0.9700 |
| C7—Pd1—N1 | 91.56 (19) | C7—C12—C11 | 122.2 (5) |
| C7—Pd1—N2 | 174.34 (18) | C7—C12—H12 | 118.9 |
| N1—Pd1—N2 | 83.35 (16) | C11—C12—H12 | 118.9 |
| C7—Pd1—I1 | 89.51 (15) | C10—C11—C12 | 118.1 (5) |
| N1—Pd1—I1 | 178.59 (11) | C10—C11—H11 | 120.9 |
| N2—Pd1—I1 | 95.55 (11) | C12—C11—H11 | 120.9 |
| C4—N2—C5 | 110.1 (4) | C9—C8—C7 | 121.4 (5) |
| C4—N2—C6 | 109.4 (4) | C9—C8—H8 | 119.3 |
| C5—N2—C6 | 107.6 (4) | C7—C8—H8 | 119.3 |
| C4—N2—Pd1 | 105.2 (3) | N1—C1—H1A | 109.5 |
| C5—N2—Pd1 | 107.6 (3) | N1—C1—H1B | 109.5 |
| C6—N2—Pd1 | 116.8 (3) | H1A—C1—H1B | 109.5 |
| C1—N1—C2 | 108.0 (4) | N1—C1—H1C | 109.5 |
| C1—N1—C3 | 110.4 (4) | H1A—C1—H1C | 109.5 |
| C2—N1—C3 | 107.5 (4) | H1B—C1—H1C | 109.5 |
| C1—N1—Pd1 | 110.6 (3) | N1—C2—H2A | 109.5 |
| C2—N1—Pd1 | 115.2 (3) | N1—C2—H2B | 109.5 |
| C3—N1—Pd1 | 105.0 (3) | H2A—C2—H2B | 109.5 |
| N2—C4—C3 | 111.5 (4) | N1—C2—H2C | 109.5 |
| N2—C4—H4A | 109.3 | H2A—C2—H2C | 109.5 |
| C3—C4—H4A | 109.3 | H2B—C2—H2C | 109.5 |
| N2—C4—H4B | 109.3 | C11—C10—F1 | 119.3 (5) |
| C3—C4—H4B | 109.3 | C11—C10—C9 | 122.4 (5) |
| H4A—C4—H4B | 108.0 | F1—C10—C9 | 118.3 (5) |
| C12—C7—C8 | 117.4 (5) | N2—C6—H6A | 109.5 |
| C12—C7—Pd1 | 122.3 (4) | N2—C6—H6B | 109.5 |
| C8—C7—Pd1 | 120.0 (4) | H6A—C6—H6B | 109.5 |
| C8—C9—C10 | 118.4 (5) | N2—C6—H6C | 109.5 |
| C8—C9—H9 | 120.8 | H6A—C6—H6C | 109.5 |
| C10—C9—H9 | 120.8 | H6B—C6—H6C | 109.5 |
| N2—C5—H5A | 109.5 | N1—C3—C4 | 110.6 (5) |
| N2—C5—H5B | 109.5 | N1—C3—H3A | 109.5 |
| H5A—C5—H5B | 109.5 | C4—C3—H3A | 109.5 |
| N2—C5—H5C | 109.5 | N1—C3—H3B | 109.5 |
| H5A—C5—H5C | 109.5 | C4—C3—H3B | 109.5 |
| H5B—C5—H5C | 109.5 | H3A—C3—H3B | 108.1 |
| C7—Pd1—N2—C4 | −35.7 (19) | N1—Pd1—C7—C12 | 74.4 (4) |
| N1—Pd1—N2—C4 | −9.8 (3) | N2—Pd1—C7—C12 | 100.1 (18) |
| I1—Pd1—N2—C4 | 171.0 (3) | I1—Pd1—C7—C12 | −106.5 (4) |
| C7—Pd1—N2—C5 | 81.7 (18) | N1—Pd1—C7—C8 | −98.7 (4) |
| N1—Pd1—N2—C5 | 107.5 (3) | N2—Pd1—C7—C8 | −73.0 (19) |
| I1—Pd1—N2—C5 | −71.6 (3) | I1—Pd1—C7—C8 | 80.4 (4) |
| C7—Pd1—N2—C6 | −157.2 (17) | C8—C7—C12—C11 | 3.0 (8) |
| N1—Pd1—N2—C6 | −131.4 (4) | Pd1—C7—C12—C11 | −170.3 (4) |
| I1—Pd1—N2—C6 | 49.5 (4) | C7—C12—C11—C10 | −1.7 (8) |
| C7—Pd1—N1—C1 | −81.4 (4) | C10—C9—C8—C7 | −0.3 (9) |
| N2—Pd1—N1—C1 | 101.0 (4) | C12—C7—C8—C9 | −1.9 (8) |
| I1—Pd1—N1—C1 | 139 (4) | Pd1—C7—C8—C9 | 171.5 (5) |
| C7—Pd1—N1—C2 | 41.4 (4) | C12—C11—C10—F1 | 179.1 (5) |
| N2—Pd1—N1—C2 | −136.1 (4) | C12—C11—C10—C9 | −0.7 (8) |
| I1—Pd1—N1—C2 | −98 (5) | C8—C9—C10—C11 | 1.7 (9) |
| C7—Pd1—N1—C3 | 159.5 (3) | C8—C9—C10—F1 | −178.1 (5) |
| N2—Pd1—N1—C3 | −18.1 (3) | C1—N1—C3—C4 | −75.3 (6) |
| I1—Pd1—N1—C3 | 20 (5) | C2—N1—C3—C4 | 167.1 (4) |
| C5—N2—C4—C3 | −78.6 (5) | Pd1—N1—C3—C4 | 43.9 (5) |
| C6—N2—C4—C3 | 163.2 (5) | N2—C4—C3—N1 | −57.3 (6) |
| Pd1—N2—C4—C3 | 37.0 (5) |
| H··· | ||||
| C2—H2 | 0.96 | 2.57 | 3.445 (6) | 151 |
| C5—H5 | 0.96 | 2.59 | 3.412 (5) | 144 |
| C1—H1 | 0.96 | 3.19 | 4.050 (5) | 150 |
| C4—H4 | 0.97 | 3.24 | 4.017 (5) | 138 |
Selected bond lengths ()
| Pd1C7 | 1.990(5) |
| Pd1N1 | 2.138(4) |
| Pd1N2 | 2.198(4) |
| Pd1I1 | 2.5823(7) |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| C2H2 | 0.96 | 2.57 | 3.445(6) | 151 |
| C5H5 | 0.96 | 2.59 | 3.412(5) | 144 |
| C1H1 | 0.96 | 3.19 | 4.050(5) | 150 |
| C4H4 | 0.97 | 3.24 | 4.017(5) | 138 |
Symmetry codes: (i) ; (ii) ; (iii) .