Literature DB >> 25995885

Crystal structure of poly[di-μ-aqua-{5-[(1Z)-2-(4-chloro-phen-yl)-1-cyano-ethenyl]-1,2,3,4-tetra-zol-1-ido-κN (1)}sodium].

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Ahmed M M El-Saghier4, Mustafa R Albayati5.   

Abstract

In the title compound, [Na(C10H5ClN5)(H2O)2] n , infinite chains of [Na(H2O)2](+) cations having a diamond-shaped cross-section and running parallel to the b axis are formed. O-H⋯N hydrogen bonds to the anions generate layers parallel to (100) which have the chloro-benzene-cyano-ethenyl substituents protruding from both surfaces. The sodium ion makes a short contact of 2.4801 (13) Å with the N atom of the tetra-zolide ring which is syn to the cyano N atom.

Entities:  

Keywords:  crystal structure; hydrogen bonding; sodium salt; tetra­zoles

Year:  2015        PMID: 25995885      PMCID: PMC4420058          DOI: 10.1107/S2056989015006325

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For chemical behaviour of tetra­zoles, see: Smith et al. (1991 ▸); Duncia et al. (1990 ▸). For various industrial applications of different tetra­zole derivatives, see: Modarresi et al. (2009 ▸); Singh et al. (1980 ▸). For medicinal activities of compounds with a tetra­zole scaffold, see: Myznikov et al. (2007 ▸); Schocken et al. (1989 ▸); Mekni & Bakloiti (2008 ▸); Lim et al. (2007 ▸).

Experimental

Crystal data

[Na(C10H5ClN5)(H2O)2] M = 289.66 Monoclinic, a = 22.0438 (4) Å b = 3.8343 (1) Å c = 15.0141 (3) Å β = 92.427 (1)° V = 1267.89 (5) Å3 Z = 4 Cu Kα radiation μ = 3.08 mm−1 T = 150 K 0.29 × 0.11 × 0.04 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.73, T max = 0.89 9115 measured reflections 2560 independent reflections 2249 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.086 S = 1.03 2560 reflections 172 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.37 e Å−3

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015006325/tk5364sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015006325/tk5364Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015006325/tk5364fig1.tif Title compound with numbering scheme and 50% probability ellipsoids. Click here for additional data file. 2 2 + n x y z x y z x y z x y z x y z x y z . DOI: 10.1107/S2056989015006325/tk5364fig2.tif A portion of the {[Na(H2O)2]+}n chain (symmetry operations: (i) x, 1 + y, z, (ii) 2 − x,  + y,  − z, (iii) x, −1 + y, z, (iv) 2 − x, − + y,  − z, (v) 2 − x, − + y,  − z, (vi) x, −2 + y, z). Click here for additional data file. b . DOI: 10.1107/S2056989015006325/tk5364fig3.tif Packing viewed along the b axis. Click here for additional data file. . DOI: 10.1107/S2056989015006325/tk5364fig4.tif Elevation view of the chain structure. CCDC reference: 1056677 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Na(C10H5ClN5)(H2O)2]F(000) = 592
Mr = 289.66Dx = 1.517 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
a = 22.0438 (4) ÅCell parameters from 6311 reflections
b = 3.8343 (1) Åθ = 4.0–74.5°
c = 15.0141 (3) ŵ = 3.08 mm1
β = 92.427 (1)°T = 150 K
V = 1267.89 (5) Å3Plate, colourless
Z = 40.29 × 0.11 × 0.04 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer2560 independent reflections
Radiation source: INCOATEC IµS micro–focus source2249 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.026
Detector resolution: 10.4167 pixels mm-1θmax = 74.5°, θmin = 2.0°
ω scansh = −27→25
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −4→4
Tmin = 0.73, Tmax = 0.89l = −18→18
9115 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: mixed
wR(F2) = 0.086H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0487P)2 + 0.4982P] where P = (Fo2 + 2Fc2)/3
2560 reflections(Δ/σ)max = 0.001
172 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 Å) while those attached to oxygen were placed in locations derived from a difference map and their parameters adjusted to give O—H = 0.84 Å. All were included as riding contributions with isotropic displacement parameters 1.2 times those of the attached atoms.
xyzUiso*/Ueq
Cl10.49516 (2)0.10717 (11)0.35718 (3)0.03137 (13)
N10.86367 (6)1.0318 (4)0.43087 (8)0.0206 (3)
N20.91834 (6)1.1473 (4)0.46047 (8)0.0220 (3)
N30.92611 (6)1.0749 (4)0.54572 (8)0.0221 (3)
N40.87680 (6)0.9091 (4)0.57424 (8)0.0209 (3)
N50.74923 (7)0.5087 (5)0.65661 (10)0.0382 (4)
C10.83943 (7)0.8871 (4)0.50194 (9)0.0176 (3)
C20.77918 (7)0.7259 (4)0.50140 (9)0.0194 (3)
C30.76111 (7)0.6066 (5)0.58710 (10)0.0242 (3)
C40.74473 (7)0.6828 (4)0.42591 (10)0.0210 (3)
H40.76290.75790.37290.025*
C50.68365 (7)0.5378 (4)0.41324 (10)0.0204 (3)
C60.66615 (7)0.4117 (4)0.32820 (10)0.0240 (3)
H60.69410.42140.28180.029*
C70.60884 (7)0.2734 (4)0.31088 (10)0.0244 (3)
H70.59770.18350.25350.029*
C80.56795 (7)0.2681 (4)0.37836 (11)0.0232 (3)
C90.58373 (7)0.3933 (5)0.46302 (10)0.0254 (3)
H90.55530.38700.50880.030*
C100.64131 (7)0.5273 (4)0.47993 (10)0.0243 (3)
H100.65230.61350.53770.029*
Na10.92711 (3)0.78850 (17)0.72191 (4)0.02362 (16)
O10.99226 (5)0.9704 (3)0.84267 (6)0.0211 (2)
H1A1.01460.81470.86590.025*
H1B0.97171.07680.87990.025*
O20.86926 (5)0.2859 (3)0.75583 (7)0.0251 (3)
H2A0.86640.33400.81010.030*
H2B0.83260.23950.74340.030*
U11U22U33U12U13U23
Cl10.0220 (2)0.0323 (2)0.0393 (2)−0.00816 (16)−0.00439 (15)−0.00037 (17)
N10.0179 (6)0.0247 (7)0.0192 (6)−0.0011 (5)0.0002 (5)0.0004 (5)
N20.0194 (6)0.0248 (7)0.0216 (6)−0.0015 (5)0.0001 (5)0.0001 (5)
N30.0196 (6)0.0251 (7)0.0214 (6)−0.0024 (5)−0.0017 (5)−0.0011 (5)
N40.0190 (6)0.0243 (7)0.0191 (6)−0.0017 (5)−0.0008 (5)−0.0003 (5)
N50.0268 (8)0.0584 (11)0.0292 (7)−0.0056 (8)−0.0005 (6)0.0161 (7)
C10.0171 (7)0.0178 (7)0.0179 (6)0.0020 (6)0.0007 (5)−0.0010 (5)
C20.0181 (7)0.0181 (7)0.0221 (7)0.0018 (6)0.0019 (5)0.0021 (6)
C30.0161 (7)0.0301 (9)0.0260 (8)−0.0015 (6)−0.0029 (6)0.0041 (7)
C40.0195 (7)0.0214 (7)0.0222 (7)0.0002 (6)0.0022 (5)0.0008 (6)
C50.0187 (7)0.0187 (7)0.0237 (7)0.0013 (6)−0.0009 (5)0.0008 (6)
C60.0226 (8)0.0262 (8)0.0230 (7)0.0024 (7)0.0007 (6)0.0003 (6)
C70.0243 (8)0.0235 (8)0.0250 (7)0.0014 (7)−0.0049 (6)−0.0027 (6)
C80.0190 (7)0.0190 (8)0.0311 (8)−0.0018 (6)−0.0039 (6)0.0020 (6)
C90.0201 (8)0.0300 (9)0.0263 (7)0.0005 (7)0.0028 (6)0.0013 (7)
C100.0232 (8)0.0262 (8)0.0233 (7)0.0001 (7)−0.0014 (6)−0.0028 (6)
Na10.0246 (3)0.0255 (3)0.0205 (3)0.0022 (3)−0.0020 (2)−0.0011 (2)
O10.0211 (5)0.0246 (6)0.0176 (5)0.0045 (4)0.0001 (4)−0.0001 (4)
O20.0252 (6)0.0323 (6)0.0175 (5)0.0033 (5)−0.0022 (4)−0.0019 (5)
Cl1—C81.7359 (16)C7—C81.384 (2)
N1—C11.3343 (19)C7—H70.9500
N1—N21.3419 (18)C8—C91.389 (2)
N2—N31.3138 (17)C9—C101.383 (2)
N3—N41.3449 (18)C9—H90.9500
N4—C11.3374 (19)C10—H100.9500
N4—Na12.4801 (13)Na1—O2i2.3619 (13)
N5—C31.150 (2)Na1—O12.3697 (12)
C1—C21.465 (2)Na1—O22.3780 (14)
C2—C41.348 (2)Na1—O1ii2.3941 (12)
C2—C31.438 (2)O1—Na1iii2.3941 (12)
C4—C51.462 (2)O1—H1A0.8399
C4—H40.9500O1—H1B0.8398
C5—C101.398 (2)O2—Na1iv2.3619 (13)
C5—C61.404 (2)O2—H2A0.8399
C6—C71.385 (2)O2—H2B0.8401
C6—H60.9500
C1—N1—N2104.89 (12)C9—C10—C5120.98 (15)
N3—N2—N1109.33 (12)C9—C10—H10119.5
N2—N3—N4109.65 (12)C5—C10—H10119.5
C1—N4—N3104.47 (12)O2i—Na1—O184.99 (4)
C1—N4—Na1161.92 (11)O2i—Na1—O2107.99 (5)
N3—N4—Na192.06 (8)O1—Na1—O2112.82 (4)
N1—C1—N4111.66 (13)O2i—Na1—O1ii156.29 (5)
N1—C1—C2124.39 (13)O1—Na1—O1ii91.35 (4)
N4—C1—C2123.95 (13)O2—Na1—O1ii95.05 (4)
C4—C2—C3123.10 (14)O2i—Na1—N479.46 (4)
C4—C2—C1122.35 (13)O1—Na1—N4149.61 (5)
C3—C2—C1114.51 (13)O2—Na1—N496.83 (4)
N5—C3—C2177.07 (17)O1ii—Na1—N492.55 (4)
C2—C4—C5129.74 (14)O2i—Na1—N384.63 (4)
C2—C4—H4115.1O1—Na1—N3125.07 (5)
C5—C4—H4115.1O2—Na1—N3121.70 (4)
C10—C5—C6118.38 (14)O1ii—Na1—N378.35 (4)
C10—C5—C4123.85 (14)N4—Na1—N327.99 (4)
C6—C5—C4117.74 (14)Na1—O1—Na1iii106.04 (4)
C7—C6—C5121.07 (14)Na1—O1—H1A115.7
C7—C6—H6119.5Na1iii—O1—H1A95.6
C5—C6—H6119.5Na1—O1—H1B109.0
C8—C7—C6119.03 (14)Na1iii—O1—H1B116.9
C8—C7—H7120.5H1A—O1—H1B113.0
C6—C7—H7120.5Na1iv—O2—Na1107.98 (5)
C7—C8—C9121.26 (15)Na1iv—O2—H2A116.7
C7—C8—Cl1119.77 (12)Na1—O2—H2A95.3
C9—C8—Cl1118.96 (12)Na1iv—O2—H2B107.7
C10—C9—C8119.26 (15)Na1—O2—H2B130.0
C10—C9—H9120.4H2A—O2—H2B98.7
C8—C9—H9120.4
C1—N1—N2—N3−0.19 (17)C3—C2—C4—C54.3 (3)
N1—N2—N3—N40.17 (17)C1—C2—C4—C5−178.16 (15)
N1—N2—N3—Na131.8 (5)C2—C4—C5—C1023.5 (3)
N2—N3—N4—C1−0.08 (17)C2—C4—C5—C6−158.45 (17)
N2—N3—N4—Na1172.51 (11)C10—C5—C6—C7−1.3 (2)
N2—N1—C1—N40.14 (17)C4—C5—C6—C7−179.43 (15)
N2—N1—C1—C2179.72 (14)C5—C6—C7—C81.5 (2)
N3—N4—C1—N1−0.04 (17)C6—C7—C8—C9−1.0 (2)
Na1—N4—C1—N1−155.5 (3)C6—C7—C8—Cl1178.18 (13)
N3—N4—C1—C2−179.62 (14)C7—C8—C9—C100.3 (3)
Na1—N4—C1—C224.9 (4)Cl1—C8—C9—C10−178.91 (13)
N1—C1—C2—C46.0 (2)C8—C9—C10—C5−0.1 (3)
N4—C1—C2—C4−174.48 (15)C6—C5—C10—C90.6 (2)
N1—C1—C2—C3−176.27 (15)C4—C5—C10—C9178.56 (15)
N4—C1—C2—C33.3 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N3ii0.842.042.8443 (17)160
O1—H1B···N2v0.842.022.8593 (17)175
O2—H2B···N50.842.443.1009 (19)136
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1AN3i 0.842.042.8443(17)160
O1H1BN2ii 0.842.022.8593(17)175
O2H2BN50.842.443.1009(19)136

Symmetry codes: (i) ; (ii) .

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