Literature DB >> 25995862

Crystal structure of (Z)-N'-[1-(3-methyl-5-oxo-1-phenyl-1,5-di-hydro-4H-pyrazol-4-yl-idene)prop-yl]benzene-sulfono-hydrazide.

Chuan-Chuan He1, Guan-Cheng Xu1.   

Abstract

The title compound, C19H20N4O3S, was synthesized by refluxing equimolar amounts of 1-phenyl-3-methyl-4-propionylpyrazol-5-one and benzene-sulfonyl hydrazide in ethanol. The compound crystallizes in the keto form and the carbonyl O atom forms an intra-molecular N-H⋯O hydrogen bond with the neighbouring NH group. There is also C-H⋯O short contact involving the neighbouring phenyl ring. Probably as a result of this, the phenyl ring is inclined to the pyrazolone ring by only 7.58 (12)°. The dihedral angle between the phenyl ring and the benzene-sulfonyl ring is 22.78 (11)°. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers with an R (2) 2(14) ring motif. The dimers are linked via pairs of C-H⋯O hydrogen bonds, forming chains propagating along [100].

Entities:  

Keywords:  crystal structure; hydrogen bonding; polymer chain; pyrazolone derivative

Year:  2015        PMID: 25995862      PMCID: PMC4420066          DOI: 10.1107/S2056989015007094

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Many pyrazolo­nes and their derivatives possess biological and pharmaceutical activities, such as anti­cancer, anti­tumor and anti­fungal activities as well as the inhibition of lipid peroxidation (Wang et al., 1991 ▸; Yu et al., 1993 ▸; Padhyé & Kauffman, 1985 ▸; Yang et al., 1992 ▸). Among them, the 4-acyl pyrazolone derivatives have aroused great scientific inter­est because of their relatively simple synthesis, wide availability and structural versatility (Raman et al., 2001 ▸; Yoshikuni, 1999 ▸; Uzoukwu et al., 1996 ▸; Yang et al., 2000 ▸). In recent years, we have devoted our efforts to the design and synthesis of 4-acyl pyrazolone derivatives and their transition metal complexes (Zhang et al., 2004 ▸; Xu et al., 2013 ▸; Yi et al., 2014 ▸; Li et al., 2013 ▸). Such 4-acyl pyrazolone derivatives can form different types of complexes due to the multiple coordination sites and the tautomeric enol-to-keto effect. Furthermore, some of complexes have been shown to have strong anti­bacterial activity. For example, the copper complex [CuL(EtOH)] [where L is the N-(1-phenyl-3-methyl-4-propenyl­idene-5-pyrazolone)salicyl­idene hydrazide anion] may be a promising drug for cancer chemotherapy (Wang et al., 2007 ▸). This has encouraged us to investigate more 4-acyl pyrazolone derivatives and herein we report on the synthesis and crystal structure of the title compound.

Structural commentary

The mol­ecular structure of the title compound is shown in Fig. 1 ▸. The bond lengths and angles are close to the expected values. For example, the C7—O1 bond length of 1.259 (2) Å is in good agreement with that for a C=O double bond. The C9—N2 bond length of 1.298 (3) Å is consistent with that for a normal C=N double bond, which indicates that the compound exists in the keto form. In addition, the C11—N3 bond length of 1.335 (2) Å, is very close to that for a C—N single bond. The C8—C11 bond [1.387 (3) Å] approaches the normal C=C bond length. These results indicate that the compound does not adopt the structure of a Schiff base.
Figure 1

The mol­ecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.

The carbonyl O atom, O1, forms an intra­molecular N—H⋯O hydrogen bond with the neighbouring NH group (N3—H3A), and there is a short intra­molecular C—H⋯O contact involving the neighbouring phenyl ring (C1–C6) (Table 1 ▸ and Fig. 1 ▸). This phenyl ring is inclined to the pyrazolone ring (N1/N2/C7–C9) by 7.58 (12)°, which is close to the value of 6.2 (2)° reported for a related compound, 4-iso­propyl­idene-3-methyl-1-(3-nitro­phen­yl)-1H-pyrazol-5(4H)-one, which also exists in the keto form (Wardell et al., 2007 ▸). The dihedral angle between the phenyl ring and the benzene­sulfonyl ring (C14–C19) is 22.78 (11)°. Hence, the whole mol­ecule is non-planar, with the torsion angle about the hydrazide bond, C11—N3—N4—S1, being −105.91 (18)°.
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N3H3AO10.921.882.667(2)142
C2H2O10.932.352.958(3)123
N4H4AO1i 0.931.902.800(2)162
C5H5O2ii 0.932.563.299(3)137

Symmetry codes: (i) ; (ii) .

Supra­molecular features

In the crystal, atom N4 acts as a donor and forms an N—H⋯O hydrogen bond with atom O1i (Table 1 ▸). Mol­ecules are linked by pairs of these hydrogen bonds, forming inversion dimers with an (14) ring motif. Neighbouring dimers are linked by pairs of C—H⋯O hydrogen bonds, forming chains propagating along [100] (Table 1 ▸ and Fig. 2 ▸).
Figure 2

A view of the crystal packing of the title compound, with the hydrogen bonds shown as dashed lines (see Table 1 ▸ for details).

Synthesis and crystallization

1-Phenyl-3-methyl-4-propionyl-pyrazolone-5 (20 mmol, 4.6 g) was dissolved in 25 mL of hot anhydrous n class="Chemical">ethanol, and an ethanol solution of benzene­sulfonyl hydrazide (20 mmol, 3.4 g) was slowly added with constant stirring. After adding a few drops of glacial acetic acid as catalyst, the mixture was refluxed for 4 h. After cooling, the precipitate that had formed was collected by filtration. A light-yellow product was obtained (yield 87%; m.p.: 483–484 K). Yellow block-like crystals, suitable for X-ray diffraction analysis, were obtained from a methanol solution upon slow evaporation at room temperature.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The NH H atoms were located in a difference Fourier map and refined as riding atoms. C-bound H atoms were positioned geometrically and refined as riding: C—H = 0.93–0.97 Å with U iso(H) = 1.5U eq(C) for methyl H atoms and 1.2U eq(N,C) for other H atoms.
Table 2

Experimental details

Crystal data
Chemical formulaC19H20N4O3S
M r 384.45
Crystal system, space groupMonoclinic, P21/n
Temperature (K)295
a, b, c ()10.601(2), 16.954(3), 11.246(2)
()107.19(3)
V (3)1931.0(7)
Z 4
Radiation typeMo K
(mm1)0.19
Crystal size (mm)0.22 0.21 0.20
 
Data collection
DiffractometerRigaku R-AXIS SPIDER
Absorption correctionMulti-scan (ABSCOR; Higashi, 1995)
T min, T max 0.959, 0.962
No. of measured, independent and observed [I > 2(I)] reflections14175, 3339, 2574
R int 0.024
(sin /)max (1)0.595
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.040, 0.131, 1.08
No. of reflections3339
No. of parameters247
No. of restraints6
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.19, 0.26

Computer programs: RAPID-AUTO (Rigaku, 2004 ▸), SHELXS97, SHELXL97 and SHELXTL (Sheldrick, 2008 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) I, Global. DOI: 10.1107/S2056989015007094/su5112sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015007094/su5112Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015007094/su5112Isup3.cml CCDC reference: 1056718 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H20N4O3SF(000) = 808
Mr = 384.45Dx = 1.322 Mg m3
Monoclinic, P21/nMelting point: 483 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 10.601 (2) ÅCell parameters from 11125 reflections
b = 16.954 (3) Åθ = 3.1–27.5°
c = 11.246 (2) ŵ = 0.19 mm1
β = 107.19 (3)°T = 295 K
V = 1931.0 (7) Å3Block, yellow
Z = 40.22 × 0.21 × 0.20 mm
Rigaku R-AXIS SPIDER diffractometer3339 independent reflections
Radiation source: fine-focus sealed tube2574 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω oscillation scansθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −12→12
Tmin = 0.959, Tmax = 0.962k = −20→20
14175 measured reflectionsl = −13→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.0775P)2 + 0.2317P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.002
3339 reflectionsΔρmax = 0.19 e Å3
247 parametersΔρmin = −0.26 e Å3
6 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.016 (2)
Experimental. Jacobson, R. (1998) Private communication
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.51056 (18)0.94366 (12)0.32605 (18)0.0557 (5)
N10.60151 (15)0.92936 (10)0.44496 (15)0.0567 (4)
O10.78565 (13)1.00662 (8)0.44919 (12)0.0578 (4)
S11.10584 (5)1.10154 (3)0.79571 (4)0.0588 (2)
C20.5311 (2)1.00300 (15)0.2494 (2)0.0724 (6)
H20.60531.03520.27520.087*
N20.56682 (17)0.87417 (11)0.52278 (17)0.0663 (5)
O21.00939 (16)1.10824 (10)0.85989 (14)0.0776 (5)
C30.4398 (3)1.01385 (17)0.1336 (2)0.0815 (7)
H30.45381.05320.08130.098*
N30.97144 (15)0.98778 (9)0.66664 (14)0.0547 (4)
H3A0.93751.00740.58690.066*
O31.24221 (15)1.11194 (9)0.85898 (14)0.0796 (5)
C40.3288 (2)0.96752 (17)0.0949 (2)0.0838 (8)
H40.26830.97520.01700.101*
N41.09686 (15)1.00946 (9)0.74215 (14)0.0535 (4)
H4A1.15241.00600.69150.064*
C50.3086 (2)0.91035 (17)0.1718 (2)0.0815 (7)
H50.23290.87940.14640.098*
C60.3989 (2)0.89727 (13)0.2873 (2)0.0676 (6)
H60.38430.85740.33850.081*
C70.72508 (18)0.95903 (11)0.49872 (17)0.0501 (4)
C80.76992 (18)0.92317 (11)0.61970 (17)0.0503 (4)
C90.66454 (19)0.87097 (12)0.62447 (19)0.0589 (5)
C100.6554 (2)0.81416 (16)0.7229 (2)0.0835 (7)
H10A0.57410.78530.69470.125*
H10B0.65780.84250.79740.125*
H10C0.72840.77810.73990.125*
C110.89157 (18)0.93953 (11)0.70462 (16)0.0493 (4)
C120.9392 (2)0.90616 (12)0.83395 (18)0.0600 (5)
H12A0.86370.89130.86100.072*
H12B0.98790.94640.89030.072*
C131.0270 (3)0.83473 (15)0.8404 (2)0.0869 (8)
H13A0.98120.79620.78060.130*
H13B1.04920.81240.92240.130*
H13C1.10640.85040.82220.130*
C141.06098 (19)1.16434 (11)0.66519 (18)0.0568 (5)
C151.1583 (2)1.20180 (14)0.6279 (2)0.0734 (6)
H151.24701.19310.66980.088*
C161.1223 (3)1.25235 (15)0.5273 (2)0.0871 (7)
H161.18711.27790.50120.104*
C170.9924 (3)1.26498 (15)0.4660 (2)0.0838 (7)
H170.96911.30050.40010.101*
C180.8952 (3)1.22547 (15)0.5008 (2)0.0790 (6)
H180.80681.23260.45640.095*
C190.9296 (2)1.17543 (13)0.60173 (19)0.0655 (6)
H190.86461.14930.62680.079*
U11U22U33U12U13U23
C10.0531 (11)0.0625 (12)0.0501 (11)0.0071 (8)0.0130 (8)−0.0009 (9)
N10.0555 (9)0.0618 (10)0.0502 (9)−0.0073 (7)0.0115 (7)0.0068 (8)
O10.0642 (8)0.0615 (8)0.0462 (7)−0.0117 (6)0.0141 (6)0.0059 (6)
S10.0705 (4)0.0586 (4)0.0406 (3)−0.0030 (2)0.0062 (2)−0.0046 (2)
C20.0652 (13)0.0841 (16)0.0624 (14)0.0019 (11)0.0100 (10)0.0130 (12)
N20.0668 (11)0.0688 (12)0.0632 (11)−0.0128 (8)0.0187 (9)0.0121 (9)
O20.1026 (11)0.0837 (11)0.0520 (9)0.0062 (8)0.0312 (8)−0.0069 (8)
C30.0821 (17)0.0970 (19)0.0604 (14)0.0190 (13)0.0132 (12)0.0191 (13)
N30.0611 (10)0.0595 (10)0.0388 (8)−0.0095 (7)0.0075 (7)0.0013 (7)
O30.0780 (8)0.0758 (10)0.0623 (9)−0.0147 (7)−0.0146 (7)−0.0001 (7)
C40.0763 (16)0.100 (2)0.0614 (15)0.0200 (14)−0.0012 (12)−0.0071 (14)
N40.0558 (9)0.0574 (10)0.0437 (9)−0.0033 (7)0.0091 (7)−0.0008 (7)
C50.0689 (15)0.0896 (18)0.0735 (16)0.0018 (12)0.0019 (12)−0.0150 (14)
C60.0627 (13)0.0680 (14)0.0670 (14)−0.0012 (10)0.0112 (10)−0.0069 (11)
C70.0576 (11)0.0464 (10)0.0469 (11)−0.0025 (8)0.0162 (8)−0.0002 (8)
C80.0609 (11)0.0474 (10)0.0427 (10)−0.0016 (8)0.0156 (8)0.0021 (8)
C90.0655 (12)0.0557 (12)0.0559 (12)−0.0068 (9)0.0185 (10)0.0068 (9)
C100.0920 (17)0.0807 (16)0.0752 (16)−0.0210 (12)0.0207 (13)0.0245 (13)
C110.0635 (11)0.0435 (10)0.0409 (10)0.0012 (8)0.0154 (8)0.0002 (8)
C120.0749 (13)0.0577 (12)0.0436 (11)−0.0016 (9)0.0116 (9)0.0051 (9)
C130.1057 (19)0.0747 (17)0.0699 (16)0.0203 (13)0.0099 (13)0.0182 (12)
C140.0694 (13)0.0503 (11)0.0460 (11)0.0037 (9)0.0099 (9)−0.0067 (8)
C150.0750 (14)0.0680 (14)0.0705 (14)−0.0041 (11)0.0113 (11)0.0089 (12)
C160.1027 (19)0.0792 (17)0.0794 (17)−0.0031 (14)0.0272 (15)0.0186 (14)
C170.1109 (19)0.0750 (16)0.0588 (14)0.0157 (12)0.0145 (13)0.0111 (12)
C180.0837 (15)0.0764 (16)0.0664 (14)0.0237 (11)0.0060 (11)0.0025 (12)
C190.0697 (13)0.0644 (13)0.0600 (13)0.0122 (10)0.0155 (10)−0.0039 (10)
C1—C61.380 (3)C8—C111.387 (3)
C1—C21.383 (3)C8—C91.439 (3)
C1—N11.419 (2)C9—C101.492 (3)
N1—C71.366 (2)C10—H10A0.9600
N1—N21.402 (2)C10—H10B0.9600
O1—C71.259 (2)C10—H10C0.9600
S1—O21.4197 (17)C11—C121.502 (3)
S1—O31.4211 (16)C12—C131.517 (3)
S1—N41.6658 (17)C12—H12A0.9700
S1—C141.761 (2)C12—H12B0.9700
C2—C31.386 (3)C13—H13A0.9600
C2—H20.9300C13—H13B0.9600
N2—C91.298 (3)C13—H13C0.9600
C3—C41.374 (4)C14—C191.378 (3)
C3—H30.9300C14—C151.379 (3)
N3—C111.335 (2)C15—C161.380 (3)
N3—N41.399 (2)C15—H150.9300
N3—H3A0.9241C16—C171.362 (3)
C4—C51.357 (4)C16—H160.9300
C4—H40.9300C17—C181.380 (4)
N4—H4A0.9335C17—H170.9300
C5—C61.385 (3)C18—C191.377 (3)
C5—H50.9300C18—H180.9300
C6—H60.9300C19—H190.9300
C7—C81.437 (3)
C6—C1—C2119.73 (19)N2—C9—C10118.08 (18)
C6—C1—N1118.73 (19)C8—C9—C10130.27 (18)
C2—C1—N1121.54 (18)C9—C10—H10A109.5
C7—N1—N2111.31 (15)C9—C10—H10B109.5
C7—N1—C1130.51 (17)H10A—C10—H10B109.5
N2—N1—C1118.13 (15)C9—C10—H10C109.5
O2—S1—O3120.96 (10)H10A—C10—H10C109.5
O2—S1—N4106.62 (9)H10B—C10—H10C109.5
O3—S1—N4103.79 (9)N3—C11—C8116.80 (16)
O2—S1—C14108.53 (10)N3—C11—C12118.51 (16)
O3—S1—C14109.05 (10)C8—C11—C12124.69 (17)
N4—S1—C14107.02 (8)C11—C12—C13111.87 (18)
C1—C2—C3119.1 (2)C11—C12—H12A109.2
C1—C2—H2120.4C13—C12—H12A109.2
C3—C2—H2120.4C11—C12—H12B109.2
C9—N2—N1106.83 (16)C13—C12—H12B109.2
C4—C3—C2121.1 (3)H12A—C12—H12B107.9
C4—C3—H3119.4C12—C13—H13A109.5
C2—C3—H3119.4C12—C13—H13B109.5
C11—N3—N4123.07 (15)H13A—C13—H13B109.5
C11—N3—H3A115.4C12—C13—H13C109.5
N4—N3—H3A121.5H13A—C13—H13C109.5
C5—C4—C3119.2 (2)H13B—C13—H13C109.5
C5—C4—H4120.4C19—C14—C15120.9 (2)
C3—C4—H4120.4C19—C14—S1119.79 (17)
N3—N4—S1114.10 (12)C15—C14—S1119.35 (16)
N3—N4—H4A105.7C14—C15—C16119.0 (2)
S1—N4—H4A107.5C14—C15—H15120.5
C4—C5—C6121.1 (2)C16—C15—H15120.5
C4—C5—H5119.5C17—C16—C15120.4 (2)
C6—C5—H5119.5C17—C16—H16119.8
C1—C6—C5119.7 (2)C15—C16—H16119.8
C1—C6—H6120.2C16—C17—C18120.5 (2)
C5—C6—H6120.2C16—C17—H17119.7
O1—C7—N1126.01 (17)C18—C17—H17119.7
O1—C7—C8128.38 (17)C19—C18—C17119.7 (2)
N1—C7—C8105.59 (16)C19—C18—H18120.2
C11—C8—C7123.18 (17)C17—C18—H18120.2
C11—C8—C9132.19 (17)C18—C19—C14119.5 (2)
C7—C8—C9104.62 (16)C18—C19—H19120.3
N2—C9—C8111.59 (18)C14—C19—H19120.3
D—H···AD—HH···AD···AD—H···A
N3—H3A···O10.921.882.667 (2)142
C2—H2···O10.932.352.958 (3)123
N4—H4A···O1i0.931.902.800 (2)162
C5—H5···O2ii0.932.563.299 (3)137
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