Literature DB >> 25995838

Powder to become crystal clear.

Quan Hao1.   

Abstract

A simulation by Zhang et al. [IUCrJ (2015), 2, 322-326] has demonstrated that utilizing serial crystallography may turn one-dimensional powder diffraction from multiphase polycrystalline samples into three-dimensional single-crystal diffraction patterns.

Entities:  

Keywords:  multiphase; polycrystalline samples; serial crystallography

Year:  2015        PMID: 25995838      PMCID: PMC4420539          DOI: 10.1107/S2052252515004017

Source DB:  PubMed          Journal:  IUCrJ        ISSN: 2052-2525            Impact factor:   4.769


The development of X-ray free electron lasers (XFELs) has opened up new opportunities for experiments that seem impossible now to become a reality in the near future. One of the new capabilities of XFELs is to collect single-crystal diffraction data from randomly oriented sub-micron-sized crystals using serial femtosecond crystallography (SFX) (Chapman et al., 2011 ▶). Many important materials, such as zeolites, are polycrystalline (powders) and cannot be grown as single crystals. Furthermore, different types of samples (multiphase) may be mixed during production of a material; for example, zeolite NU-87 may occur as an impurity in zeolite TNU-9 (Hong et al., 2007 ▶). X-ray diffraction from such samples will usually result in a one-dimensional powder pattern (Fig. 1 ▶, left). Because of the relatively large molecular size (76 non-hydrogen atoms in the case of TNU-9), the powder diffraction pattern from a zeolite can be difficult to interpret (Gramm et al., 2006 ▶). The powder diffraction pattern from a mixture of TNU-9 and NU-87 would be impossible to process.
Figure 1

A one-dimensional powder diffraction pattern seen using conventional methods (left) may potentially be analysed as three-dimensional single-crystal patterns using serial crystallography (right).

Powder samples are essentially a mixture of sub-micron-sized (typically 100 nm) single crystals. The latest sample handling techniques, such as liquid jet injectors, can deliver the crystals to the beam one at a time and the extremely intense XFEL beam can capture a diffraction image of each crystal in a sub-nanosecond time scale (Spence et al., 2012 ▶). In this issue, Zhang et al. (2015 ▶) have proposed the use of serial crystallography to turn powder diffraction into single-crystal diffraction (Fig. 1 ▶). A test has been performed using simulated diffraction patterns. The test sample is a mixture of zeolites TNU-9 and NU-87 with crystal grain sizes as small as 100 nm. X-ray diffraction snapshots by SFX were simulated and processed using the program suite CrystFEL (White et al., 2012 ▶). Identification according to the primitive unit-cell volume determined from individual snapshots was able to separate the whole set of snapshots into two subsets, which matched the two zeolites in the sample. Monte Carlo integration in CrystFEL was then applied to them separately. Two sets of three-dimensional single-crystal diffraction intensities could then be derived. The crystal structures of the two zeolites were solved using the direct methods program SHELXD (Sheldrick, 2008 ▶) with default parameters. Turning one-dimensional diffraction from polycrystalline (powder) samples, particularly from multiphase samples, into three-dimensional single-crystal diffraction patterns has long been regarded as a difficult, if not impossible, task. Zhang et al.’s proof-of-principle study has demonstrated that with the latest XFEL and sample delivery technology, single-crystal diffraction patterns can be collected from multiphase polycrystalline samples, processed, and then the molecular structures can be solved ab initio. This technique promises to open up new avenues for the study of many important polycrystalline materials that cannot be analysed by conventional X-ray powder diffraction methods.
  6 in total

1.  Complex zeolite structure solved by combining powder diffraction and electron microscopy.

Authors:  Fabian Gramm; Christian Baerlocher; Lynne B McCusker; Stewart J Warrender; Paul A Wright; Bada Han; Suk Bong Hong; Zheng Liu; Tetsu Ohsuna; Osamu Terasaki
Journal:  Nature       Date:  2006-11-02       Impact factor: 49.962

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  X-ray lasers for structural and dynamic biology.

Authors:  J C H Spence; U Weierstall; H N Chapman
Journal:  Rep Prog Phys       Date:  2012-09-13

4.  Femtosecond X-ray protein nanocrystallography.

Authors:  Henry N Chapman; Petra Fromme; Anton Barty; Thomas A White; Richard A Kirian; Andrew Aquila; Mark S Hunter; Joachim Schulz; Daniel P DePonte; Uwe Weierstall; R Bruce Doak; Filipe R N C Maia; Andrew V Martin; Ilme Schlichting; Lukas Lomb; Nicola Coppola; Robert L Shoeman; Sascha W Epp; Robert Hartmann; Daniel Rolles; Artem Rudenko; Lutz Foucar; Nils Kimmel; Georg Weidenspointner; Peter Holl; Mengning Liang; Miriam Barthelmess; Carl Caleman; Sébastien Boutet; Michael J Bogan; Jacek Krzywinski; Christoph Bostedt; Saša Bajt; Lars Gumprecht; Benedikt Rudek; Benjamin Erk; Carlo Schmidt; André Hömke; Christian Reich; Daniel Pietschner; Lothar Strüder; Günter Hauser; Hubert Gorke; Joachim Ullrich; Sven Herrmann; Gerhard Schaller; Florian Schopper; Heike Soltau; Kai-Uwe Kühnel; Marc Messerschmidt; John D Bozek; Stefan P Hau-Riege; Matthias Frank; Christina Y Hampton; Raymond G Sierra; Dmitri Starodub; Garth J Williams; Janos Hajdu; Nicusor Timneanu; M Marvin Seibert; Jakob Andreasson; Andrea Rocker; Olof Jönsson; Martin Svenda; Stephan Stern; Karol Nass; Robert Andritschke; Claus-Dieter Schröter; Faton Krasniqi; Mario Bott; Kevin E Schmidt; Xiaoyu Wang; Ingo Grotjohann; James M Holton; Thomas R M Barends; Richard Neutze; Stefano Marchesini; Raimund Fromme; Sebastian Schorb; Daniela Rupp; Marcus Adolph; Tais Gorkhover; Inger Andersson; Helmut Hirsemann; Guillaume Potdevin; Heinz Graafsma; Björn Nilsson; John C H Spence
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

5.  Synthesis, crystal structure, characterization, and catalytic properties of TNU-9.

Authors:  Suk Bong Hong; Hyung-Ki Min; Chae-Ho Shin; Paul A Cox; Stewart J Warrender; Paul A Wright
Journal:  J Am Chem Soc       Date:  2007-08-15       Impact factor: 15.419

6.  SFX analysis of non-biological polycrystalline samples.

Authors:  Tao Zhang; Shifeng Jin; Yuanxin Gu; Yao He; Ming Li; Yang Li; Haifu Fan
Journal:  IUCrJ       Date:  2015-03-20       Impact factor: 4.769

  6 in total
  1 in total

1.  The structure of denisovite, a fibrous nanocrystalline polytypic disordered 'very complex' silicate, studied by a synergistic multi-disciplinary approach employing methods of electron crystallography and X-ray powder diffraction.

Authors:  Ira V Rozhdestvenskaya; Enrico Mugnaioli; Marco Schowalter; Martin U Schmidt; Michael Czank; Wulf Depmeier; Andreas Rosenauer
Journal:  IUCrJ       Date:  2017-03-08       Impact factor: 4.769

  1 in total

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