Literature DB >> 25995385

Transposon Mutagenesis Screen Identifies Potential Lung Cancer Drivers and CUL3 as a Tumor Suppressor.

Casey Dorr1, Callie Janik2, Madison Weg2, Raha A Been3, Justin Bader4, Ryan Kang2, Brandon Ng2, Lindsey Foran2, Sean R Landman5, M Gerard O'Sullivan6, Michael Steinbach5, Aaron L Sarver2, Kevin A T Silverstein7, David A Largaespada8, Timothy K Starr9.   

Abstract

UNLABELLED: Non-small cell lung cancers (NSCLC) harbor thousands of passenger events that hide genetic drivers. Even highly recurrent events in NSCLC, such as mutations in PTEN, EGFR, KRAS, and ALK, are detected, at most, in only 30% of patients. Thus, many unidentified low-penetrant events are causing a significant portion of lung cancers. To detect low-penetrance drivers of NSCLC, a forward genetic screen was performed in mice using the Sleeping Beauty (SB) DNA transposon as a random mutagen to generate lung tumors in a Pten-deficient background. SB mutations coupled with Pten deficiency were sufficient to produce lung tumors in 29% of mice. Pten deficiency alone, without SB mutations, resulted in lung tumors in 11% of mice, whereas the rate in control mice was approximately 3%. In addition, thyroid cancer and other carcinomas, as well as the presence of bronchiolar and alveolar epithelialization, in mice deficient for Pten were also identified. Analysis of common transposon insertion sites identified 76 candidate cancer driver genes. These genes are frequently dysregulated in human lung cancers and implicate several signaling pathways. Cullin3 (Cul3), a member of a ubiquitin ligase complex that plays a role in the oxidative stress response pathway, was identified in the screen and evidence demonstrates that Cul3 functions as a tumor suppressor. IMPLICATIONS: This study identifies many novel candidate genetic drivers of lung cancer and demonstrates that CUL3 acts as a tumor suppressor by regulating oxidative stress. ©2015 American Association for Cancer Research.

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Year:  2015        PMID: 25995385      PMCID: PMC4543426          DOI: 10.1158/1541-7786.MCR-14-0674-T

Source DB:  PubMed          Journal:  Mol Cancer Res        ISSN: 1541-7786            Impact factor:   5.852


  47 in total

1.  Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon system.

Authors:  Adam J Dupuy; Keiko Akagi; David A Largaespada; Neal G Copeland; Nancy A Jenkins
Journal:  Nature       Date:  2005-07-14       Impact factor: 49.962

2.  Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse.

Authors:  Lara S Collier; Corey M Carlson; Shruthi Ravimohan; Adam J Dupuy; David A Largaespada
Journal:  Nature       Date:  2005-07-14       Impact factor: 49.962

3.  Subtle variations in Pten dose determine cancer susceptibility.

Authors:  Andrea Alimonti; Arkaitz Carracedo; John G Clohessy; Lloyd C Trotman; Caterina Nardella; Ainara Egia; Leonardo Salmena; Katia Sampieri; William J Haveman; Edi Brogi; Andrea L Richardson; Jiangwen Zhang; Pier Paolo Pandolfi
Journal:  Nat Genet       Date:  2010-04-18       Impact factor: 38.330

4.  Human mutation rate associated with DNA replication timing.

Authors:  John A Stamatoyannopoulos; Ivan Adzhubei; Robert E Thurman; Gregory V Kryukov; Sergei M Mirkin; Shamil R Sunyaev
Journal:  Nat Genet       Date:  2009-03-15       Impact factor: 38.330

Review 5.  Transcription-coupled nucleotide excision repair in mammalian cells: molecular mechanisms and biological effects.

Authors:  Maria Fousteri; Leon H F Mullenders
Journal:  Cell Res       Date:  2008-01       Impact factor: 25.617

6.  Human TDE1, a TDE1/TMS family member, inhibits apoptosis in vitro and stimulates in vivo tumorigenesis.

Authors:  M Bossolasco; F Veillette; R Bertrand; A-M Mes-Masson
Journal:  Oncogene       Date:  2006-03-20       Impact factor: 9.867

7.  HMOX1 and NQO1 genes are upregulated in response to contact sensitizers in dendritic cells and THP-1 cell line: role of the Keap1/Nrf2 pathway.

Authors:  Nadège Ade; Fanny Leon; Marc Pallardy; Jean-Luc Peiffer; Saadia Kerdine-Romer; Marie-Hélène Tissier; Pierre-Antoine Bonnet; Isabelle Fabre; Jean-Claude Ourlin
Journal:  Toxicol Sci       Date:  2008-11-25       Impact factor: 4.849

8.  Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes.

Authors:  Jeroen de Ridder; Jaap Kool; Anthony Uren; Jan Bot; Lodewyk Wessels; Marcel Reinders
Journal:  Bioinformatics       Date:  2007-07-01       Impact factor: 6.937

9.  A modified sleeping beauty transposon system that can be used to model a wide variety of human cancers in mice.

Authors:  Adam J Dupuy; Laura M Rogers; Jinsil Kim; Kishore Nannapaneni; Timothy K Starr; Pentao Liu; David A Largaespada; Todd E Scheetz; Nancy A Jenkins; Neal G Copeland
Journal:  Cancer Res       Date:  2009-10-06       Impact factor: 12.701

10.  A transposon-based genetic screen in mice identifies genes altered in colorectal cancer.

Authors:  Timothy K Starr; Raha Allaei; Kevin A T Silverstein; Rodney A Staggs; Aaron L Sarver; Tracy L Bergemann; Mihir Gupta; M Gerard O'Sullivan; Ilze Matise; Adam J Dupuy; Lara S Collier; Scott Powers; Ann L Oberg; Yan W Asmann; Stephen N Thibodeau; Lino Tessarollo; Neal G Copeland; Nancy A Jenkins; Robert T Cormier; David A Largaespada
Journal:  Science       Date:  2009-02-26       Impact factor: 47.728

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  22 in total

1.  Transposon mutagenesis identifies genes that cooperate with mutant Pten in breast cancer progression.

Authors:  Roberto Rangel; Song-Choon Lee; Kenneth Hon-Kim Ban; Liliana Guzman-Rojas; Michael B Mann; Justin Y Newberg; Takahiro Kodama; Leslie A McNoe; Luxmanan Selvanesan; Jerrold M Ward; Alistair G Rust; Kuan-Yew Chin; Michael A Black; Nancy A Jenkins; Neal G Copeland
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-14       Impact factor: 11.205

Review 2.  In vivo functional screening for systems-level integrative cancer genomics.

Authors:  Julia Weber; Christian J Braun; Dieter Saur; Roland Rad
Journal:  Nat Rev Cancer       Date:  2020-07-07       Impact factor: 60.716

3.  The number of titrated microRNA species dictates ceRNA regulation.

Authors:  Hua-Sheng Chiu; María Rodríguez Martínez; Elena V Komissarova; David Llobet-Navas; Mukesh Bansal; Evan O Paull; José Silva; Xuerui Yang; Pavel Sumazin; Andrea Califano
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

4.  CRISPR/Cas9 Genetic Modification of CYP3A5 *3 in HuH-7 Human Hepatocyte Cell Line Leads to Cell Lines with Increased Midazolam and Tacrolimus Metabolism.

Authors:  Casey R Dorr; Rory P Remmel; Amutha Muthusamy; James Fisher; Branden S Moriarity; Kazuto Yasuda; Baolin Wu; Weihua Guan; Erin G Schuetz; William S Oetting; Pamala A Jacobson; Ajay K Israni
Journal:  Drug Metab Dispos       Date:  2017-05-22       Impact factor: 3.922

5.  The role of natural products in revealing NRF2 function.

Authors:  Donna D Zhang; Eli Chapman
Journal:  Nat Prod Rep       Date:  2020-05-13       Impact factor: 13.423

6.  Genome-wide transposon screening and quantitative insertion site sequencing for cancer gene discovery in mice.

Authors:  Mathias J Friedrich; Lena Rad; Iraad F Bronner; Alexander Strong; Wei Wang; Julia Weber; Matthew Mayho; Hannes Ponstingl; Thomas Engleitner; Carolyn Grove; Anja Pfaus; Dieter Saur; Juan Cadiñanos; Michael A Quail; George S Vassiliou; Pentao Liu; Allan Bradley; Roland Rad
Journal:  Nat Protoc       Date:  2017-01-12       Impact factor: 13.491

Review 7.  The utility of transposon mutagenesis for cancer studies in the era of genome editing.

Authors:  Gina M DeNicola; Florian A Karreth; David J Adams; Chi C Wong
Journal:  Genome Biol       Date:  2015-10-19       Impact factor: 13.583

8.  Cullin3 promotes breast cancer cells metastasis and epithelial-mesenchymal transition by targeting BRMS1 for degradation.

Authors:  Xiongwei Huo; Suoni Li; Tingting Shi; Aili Suo; Zhiping Ruan; Hui Guo; Yu Yao
Journal:  Oncotarget       Date:  2015-12-08

9.  Cullin3-KLHL25 ubiquitin ligase targets ACLY for degradation to inhibit lipid synthesis and tumor progression.

Authors:  Cen Zhang; Juan Liu; Grace Huang; Yuhan Zhao; Xuetian Yue; Hao Wu; Jun Li; Junlan Zhu; Zhiyuan Shen; Bruce G Haffty; Wenwei Hu; Zhaohui Feng
Journal:  Genes Dev       Date:  2016-09-01       Impact factor: 11.361

10.  Gene Profiling in Patients with Systemic Sclerosis Reveals the Presence of Oncogenic Gene Signatures.

Authors:  Marzia Dolcino; Andrea Pelosi; Piera Filomena Fiore; Giuseppe Patuzzo; Elisa Tinazzi; Claudio Lunardi; Antonio Puccetti
Journal:  Front Immunol       Date:  2018-03-06       Impact factor: 7.561

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